Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54920 275 / 8e-79 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004472 [exp] 1251 / 0 AT1G54920 291 / 7e-85 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G034100 [exp] 437 / 2e-137 AT1G54920 332 / 5e-99 unknown protein Potri.013G023600 [exp] 427 / 3e-133 AT1G54920 341 / 5e-102 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029936 pacid=23159713 polypeptide=Lus10029936 locus=Lus10029936.g ID=Lus10029936.BGIv1.0 annot-version=v1.0 ATGGCGATCGCCGATGACGACGATGGATTCGGGGACTTCATCTTTGCTCCTCCTCCGCCTCTGAATCTCCAAAACTTCATCCGCCCCGAATCCTCCGGCA TCGCCACCTCTATGGCTCCGAATTTCGTCCAAGACGATGATTGGGGCGATTTCTTTAATTCCTCGGGCGCCGGCGGATTCTCTCACGCAGCATCGTCTCT CCCTATACCTTCGGACCTGTTCGGAATCCCCGTGGCGGGAAATCAGCACGGGGTAACGAAGAAGAAGCCGCTGGAAATGAAGCCTTCAGGAGCTTTCCCG CTTTCGCTGTTTGGAGAAATGGAGGAAGAAGCAGCGGGAGAAGAATCGGGCGATGGGTTGAAGAATTCGGATCCGGTGAAGAAGAATTCGGCGGTTAATA TAGATGTGAATGATCTGATTTCCGATTTCTATAAACCCAATGGGGACTCGAAGCCAAATGGATCGGCGAGGGAAGAAAGAAATGGATTGGATTCGAGCTG GAGCTGGGGGCATACCTCCGGATTTGGAAATGGCTTGATTGCTAATGGTACGAACGGAGTGAAATCTGAATCACGGGGACATGGTTTGGACTTTGATCCG TTGAATCTGACTTCCAATGGATCGAATTTGAACGGCAACATGTCTGGTTCGATTCTGCAAGGGTCGAATTTGAATTCAAATTCAAATTCAAATGTAGTGA ATGGTAATGAGGGATTTGATGTTGAGGAGGATGATGACGGATGGGAATTCAAGGCCGCTGAATACAAAGTGGAAGAGATTGCTAAGCCAGAGCAGATGAC GAATCAGAATGGGCTGACTTTCAATCCGAATGAACTTTACTCTAGCTGGAATGGTGCTAATTTGGACTTCTCCGGATGGAGTACTAGTTCCAATGGTGTC GAACAGAGTAGCAATTCGATGAATGATGGCTCAGTTGGTGAAAGGGAAGACCTTCCCGCGATTGATACATGGGGGCTTGCAGTTGCAGGTTCTAATGGTA TCCTGGTTGACAAAATCAAGCTCGATGGTTTCTTCGATTTTCAGAAGATTGATAAAACAACTGAGAATGTTTCAAATGAAAATTTTGATAAGTCGAGCTT AAGCTGGGATGTTGTGCAATTTTCTGATTCTAATGGCCTTGCGTCAAGCTTAAGTGGATTGAACTCAAATGTGGTACAAGCGGATCCTGGATCTTTGGAT GAGAATGATGAGTTTAGTGACGTAGATGGTTGGGCCTTCAAGGACCCAGAATCAGACATGCAAGATACCCAGGTGAAGATGGAAGATGACCTGAAAATTC AATCTATTGCTGCTGATTCAAGTGTGAAAATTTCCAACTTGGGTGGTGCTGGTGTGAATTTGGATTTGTTTGCTGCTGATTGGGATACAAGAGAAGGGAC TTCAGATATGACACAGTCGGATCACAATTTATTGACCGAAACTGAGGATCCTGATGGTGACGATGACTGGGAGTTCAAGATCGCAGAATCGGAATCAGGA CCCATTGATTCAAGCAGCAAGGTTCATGACTTGACTCATAGCCGGAGTACAGGAGCACTTCCTCTGTCGCTTTTTGGGGAAGAAGAAAAAGATGCCAATG ATCTCGCGTTACAAGAAGTCAGTTCGGCTCGGATCTCAAGAAATGACAATAGGGGTCTCAGTTCCAGTCTCTCTCTCAATGATCTGATATCAAGTTTATA CAATGAAGTTGAGCAAACTGCTTCCCCCAGTCACTTGCAGAATCAGGGTGAAAACCAGTGGGGTCCCTCAGAAACTGCATTGGCTTCCAGTGCATCAAAT GGCACTGAAGTGTTGGATGATGATACCTGGGAGTTCAAAGATGCTTCTTCAATACCCGTTCAGGAGCAAACATCTATTTCAGAAGACTCCACAATATGGT CCAGTCACATAGAGCTACCAGATTGGGTAGACTTGTTTTCCAAATTGAAGGAAGAATTGTATCTGATTGCATATCAACATCTTGAAAACATTAAGCGAAC TCGTGAAACTGCTGCTCTTACTCGCGAGGATACCGATCTCAGTGTCTTGGATAGGGAAATACAGGACCTGCATGACGAACTCGGTAACATTGCGGAAGAA GTTCATTCAGAAGATCACTTGCAACGTGACGTACGACTCAGTGAGCTGTTCGAAGTGTTGCAGCAACCGAAGTTTCAAGCCATCGAGACAGAATATCAAC TATTAGAAAAGCTGTCGTTGGTTCAGAACGACTCGAAGTCGACAGTCCAACTTCTGAAGAAGGTGTTCTCGGTGTTGAAGATTTTGACTTTAGTATTCAG ACAGGAACAATCCAGTTATACTTCCACCTGGTCTAAGATACTCTCTCTATGTGCTGAAGAGCTGCGATACGGGTCGATGATTTGGAAGCAGTTGGTACAA GAAAATATCCAGGAGCAAGTTCTATCCAGGGTTGAAGGAAAGAGGTATATCCTCGCACTTGGAGAAATTTACAGACTCGTTGAAGTTCTTCGATGCACGG CCAGGCTTTACAGGCCATGGATATTGTTGATGGGACCTGCTGATTCCGCGAGATTCAATACCGTGATGAGCGAGTGTTCTACCATGTGGTCAAGTTCAGG ACTTGAAGAAGCTCTGCTAAGCATTTCTGATGGCTCTACCATACTGGATTCGATCGCGTACCTTCGTAATCTCGAGGATGCTACACTTTACGAGATTGTT TTCTCCGGACAAGGCCCCATCTGTCAGCTCTCGGTTCTTAATCAAGGAGTAGTTCCAGGGATGGATCTAGTGGCATGGAATGGTGCTCACTACTTTGTCA AGCTCGCCAACTTGTGGACTCACTTGACGGGTTCTGACCTGCCTAGCCTGCCTCACTTACACATGGATGATGTTTAA
AA sequence Show only first row Show all	>Lus10029936 pacid=23159713 polypeptide=Lus10029936 locus=Lus10029936.g ID=Lus10029936.BGIv1.0 annot-version=v1.0 MAIADDDDGFGDFIFAPPPPLNLQNFIRPESSGIATSMAPNFVQDDDWGDFFNSSGAGGFSHAASSLPIPSDLFGIPVAGNQHGVTKKKPLEMKPSGAFP LSLFGEMEEEAAGEESGDGLKNSDPVKKNSAVNIDVNDLISDFYKPNGDSKPNGSAREERNGLDSSWSWGHTSGFGNGLIANGTNGVKSESRGHGLDFDP LNLTSNGSNLNGNMSGSILQGSNLNSNSNSNVVNGNEGFDVEEDDDGWEFKAAEYKVEEIAKPEQMTNQNGLTFNPNELYSSWNGANLDFSGWSTSSNGV EQSSNSMNDGSVGEREDLPAIDTWGLAVAGSNGILVDKIKLDGFFDFQKIDKTTENVSNENFDKSSLSWDVVQFSDSNGLASSLSGLNSNVVQADPGSLD ENDEFSDVDGWAFKDPESDMQDTQVKMEDDLKIQSIAADSSVKISNLGGAGVNLDLFAADWDTREGTSDMTQSDHNLLTETEDPDGDDDWEFKIAESESG PIDSSSKVHDLTHSRSTGALPLSLFGEEEKDANDLALQEVSSARISRNDNRGLSSSLSLNDLISSLYNEVEQTASPSHLQNQGENQWGPSETALASSASN GTEVLDDDTWEFKDASSIPVQEQTSISEDSTIWSSHIELPDWVDLFSKLKEELYLIAYQHLENIKRTRETAALTREDTDLSVLDREIQDLHDELGNIAEE VHSEDHLQRDVRLSELFEVLQQPKFQAIETEYQLLEKLSLVQNDSKSTVQLLKKVFSVLKILTLVFRQEQSSYTSTWSKILSLCAEELRYGSMIWKQLVQ ENIQEQVLSRVEGKRYILALGEIYRLVEVLRCTARLYRPWILLMGPADSARFNTVMSECSTMWSSSGLEEALLSISDGSTILDSIAYLRNLEDATLYEIV FSGQGPICQLSVLNQGVVPGMDLVAWNGAHYFVKLANLWTHLTGSDLPSLPHLHMDDV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G54920			unknown protein		Lus10029936 [exp]	0	1
AT3G01090		AKIN10, SnRK1.1	SNF1-RELATED PROTEIN KINASE 1....		Lus10036582 [exp]	1.4	0.8189
AT4G28980		CAK1AT, CDKF;1	CYCLIN-DEPENDENT KINASE F;1, C...		Lus10034931 [exp]	6.0	0.7556
					Lus10001135 [exp]	6.9	0.7701
AT2G40830		RHC1A	RING-H2 finger C1A (.1.2.3)		Lus10013235 [exp]	7.2	0.7083
AT2G25490		FBL6, EBF1	EIN3-binding F box protein 1 (...		Lus10002014 [exp]	15.0	0.7429
AT4G18230			unknown protein		Lus10024587 [exp]	19.4	0.6715
AT1G02660			alpha/beta-Hydrolases superfam...		Lus10010031 [exp]	21.2	0.7335
AT4G30210		AR2, ATR2	P450 reductase 2 (.1.2)		Lus10025484 [exp]	24.1	0.6434
					Lus10000348 [exp]	24.7	0.7143
AT5G54310		NEV, AGD5	NEVERSHED, ARF-GAP domain 5 (....		Lus10038582 [exp]	25.3	0.7125

Compare expression of checked genes

Lus10029936 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.