Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08960 601 / 0 CCX5, AtCXX5, ATCAX11, CAX11 cation calcium exchanger 5, Arabidopsis thaliana cation calcium exchanger 5, cation exchanger 11 (.1) AT5G17860 199 / 6e-55 CAX7 calcium exchanger 7 (.1) AT1G54860 179 / 9e-52 Glycoprotein membrane precursor GPI-anchored (.1) AT1G54115 182 / 2e-48 ATCCX4 cation calcium exchanger 4 (.1) AT3G06035 149 / 4e-41 Glycoprotein membrane precursor GPI-anchored (.1) AT5G17850 154 / 2e-39 Sodium/calcium exchanger family protein (.1) AT5G19250 134 / 1e-35 Glycoprotein membrane precursor GPI-anchored (.1) AT3G14070 119 / 8e-28 ATCCX3, CAX9 CATION CALCIUM EXCHANGER 3, cation exchanger 9 (.1) AT5G19240 100 / 5e-24 Glycoprotein membrane precursor GPI-anchored (.1) AT5G19230 91 / 1e-20 Glycoprotein membrane precursor GPI-anchored (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004469 [exp] 852 / 0 AT1G08960 642 / 0.0 cation calcium exchanger 5, Arabidopsis thaliana cation calcium exchanger 5, cation exchanger 11 (.1) Lus10004470 [exp] 326 / 6e-107 AT1G54860 190 / 2e-61 Glycoprotein membrane precursor GPI-anchored (.1) Lus10013635 [exp] 185 / 5e-50 AT5G17860 540 / 0.0 calcium exchanger 7 (.1) Lus10001330 [exp] 179 / 7e-48 AT5G17860 552 / 0.0 calcium exchanger 7 (.1) Lus10001329 [exp] 169 / 7e-44 AT5G17850 505 / 8e-174 Sodium/calcium exchanger family protein (.1) Lus10013634 [exp] 166 / 4e-43 AT5G17850 512 / 4e-177 Sodium/calcium exchanger family protein (.1) Lus10034054 [exp] 139 / 2e-37 AT3G06035 220 / 2e-73 Glycoprotein membrane precursor GPI-anchored (.1) Lus10010516 [exp] 138 / 5e-37 AT3G06035 226 / 9e-76 Glycoprotein membrane precursor GPI-anchored (.1) Lus10037681 [exp] 141 / 1e-34 AT1G54115 763 / 0.0 cation calcium exchanger 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G025100 [exp] 659 / 0 AT1G08960 603 / 0.0 cation calcium exchanger 5, Arabidopsis thaliana cation calcium exchanger 5, cation exchanger 11 (.1) Potri.005G034400 [exp] 207 / 6e-62 AT1G54860 167 / 6e-53 Glycoprotein membrane precursor GPI-anchored (.1) Potri.013G065900 [exp] 184 / 1e-49 AT5G17850 508 / 1e-175 Sodium/calcium exchanger family protein (.1) Potri.013G065800 [exp] 183 / 4e-49 AT5G17860 420 / 9e-141 calcium exchanger 7 (.1) Potri.019G040200 [exp] 176 / 1e-46 AT5G17860 449 / 2e-152 calcium exchanger 7 (.1) Potri.003G066900 [exp] 173 / 2e-45 AT1G54115 802 / 0.0 cation calcium exchanger 4 (.1) Potri.019G040301 [exp] 163 / 1e-42 AT5G17850 393 / 2e-131 Sodium/calcium exchanger family protein (.1) Potri.013G023801 [exp] 144 / 2e-40 AT1G54860 102 / 4e-28 Glycoprotein membrane precursor GPI-anchored (.1) Potri.010G033400 [exp] 147 / 3e-40 AT3G06035 214 / 4e-71 Glycoprotein membrane precursor GPI-anchored (.1) Potri.008G195000 [exp] 142 / 1e-38 AT3G06035 231 / 2e-77 Glycoprotein membrane precursor GPI-anchored (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01699 [flax] [poplar] Na_Ca_ex Sodium/calcium exchanger protein
Representative CDS sequence Show only first row Show all	>Lus10029938 pacid=23159744 polypeptide=Lus10029938 locus=Lus10029938.g ID=Lus10029938.BGIv1.0 annot-version=v1.0 ATGAATTACTTGAAATCGGCCTTCTTACTCTGTTTTGTCCTTCAAGCACTGATCTTGCTTCCTTCTTCTGTGCATTCCAAAGATGAGGATGAGGATAACC TTCTGCAAGGGCTGAACAGCTACAGGCAGTCACAGAGCCTTCCGATCCTGGCGAAGCACGACAAGGCAGGGTGCCTCGCGGACCGGGTGGCCAACAAGCT AGAGGACCAGCCATGTCCGGCCTCTGGAAGGGCCGCGGCTCCGGTGGTCCAGCTCAGCGACTATCCGGATGCGATGGACAAGTGCGGGGTCGACATCAAC AAGACCAGGGAAGGGGTCGTGTTGCCTGTCTGCGTAAGGAAGCTTGTCCCGACCTTGGTCCTGACAAACTATACGCAGACTCAATACGCGAGGTACCTCA ACGACTCGCGGTTTGTGGCTGCGGGGCTTGGTTCGGAGGACGATTGGATGGTGGTGGTGCTGACGACCGGCACTCCTGGAGGGAGTTTCGCTGGAGCGGG TCGGTTGGTTGGGCTCGGTGGGGTCCGGTGCTGGGCGGTGTCGTTGCTGGTTGGGGTGCTGGTTTGGAATCTTTCTACACGAGAAGGTGCAAGTGAAGAA AACCAGTCTTGGGGTAGGGTTCAAATCTTCAATCTTGGGCTCAACCTCCGCCATGGAAGCGCGTCAAGATCGAAGAAATCAACCGACAACTTCTTAATTT TTCACTTTTTCTTCTTCAAATCTCAAATCACAGAACCAGAAGAATTCGATCACTCGATCTGCCCATTTAAAAAGAGGAAACCTTTCCGCTGCTGTGGAAA TGGCATGGCATTCCCTTCTCTCAAATTCCCACCACAATATCCAATCCTCAGCTCCACAGCAGCAATCTCACTAACCCTCATCACTTCACTCCTCGCCGCA CTCACCACAGAAACCCCCCACCGTACAAATCGAAGATCCCTAATTTCACAGACCCTCAACATTTCTTGCGCAACTCTCCCGCCTTCAAATGGAATCATCA ACTACCTCTCGATCCACTTCTGCTTATTCAATTCCAACTCTTTCCTCTCCGTCCCGTCACTCTCGCTCTTCATCCTCCTCCAATTCTACATCCTCATCAA AACCGCGCAATCCCACTTCTCGGTCGTCACCACCAAGCTGGCGACTCACCTGAATCTGTCGCCGAGCATGGGTGGAGTGACGCTTTTAGCCCTGGGGAAT GGAGCTCCCGACGTGTTTGCGTCTCTTGCTGCAGTACGGTCCGGGCAGTACAGGACTGGATTCGGAGCCATACTCTCTGCGGGGACATTTGTGTCCGCCT TTGTGGTGGGTTTCGTGGCGATCTATGCGGCGCCGTTTAGTGTGGATCCCGGTTCGTTTGTGAGGGACGTTGGGTTCTACTTAGTGGCTGCTCTGTCGTT GTTTTATGTGTATCTGAGTGGGGAGATCACGTTCTGGCAGGCTGCTGGGTTTGTTGGGTTCTATGTGTTCTTCGTTGGGATTGTGTTTTGGATGGATTTG GGGATAAAAAGTAGTAGTAAAGGTCGTAGAGATAGAGGAGATTATGATGCAGAGATAATGATGGATTTTGAAAAGGTGGATGTTGAAAGGTTGAAGGCTA GCAAAGAGGAGGAAAGAGCTGCTGGATTGCTTGAACGGGCTTTTGGAAGCTTGAAGCTTCATAGAAAGGAGGAGAAGAGCTCTGGTTTTCTTGCAAAGAT TTCAAAAATCTGGGAGGTCCCCGTCATGTTGCTTCTAGACCTCACGATTCCGCAAACAGCACCATCGGAATGGAACAGGCTCTACCAATCAGGCAACATC GTTCTTTGCCCTCTGGCTCTCCTCTACGCTTGCAGCTCAATCATGCCCTTAAACCATCCCATCGCCTTCCTCCTCTCAACAACCCATTTCCCACTTTGGT TCGTCACCCTCCTCGCCGGATCCTCCCTCGCACTGCTCCACTTCATACTCGAAAAAGAACCCCCAAAGACCGAACAACTCCCTGTGGTGCTTCTGGCATT CGTAATGAGCGTCTTCTGGATATCCACCACTGCCGGAGAACTCCTCAACTGCCTGGCAGCACTCGGCACCATCCTCGAGGTAGCTCCGTCCCTTTTGGGG CTGACAGTGCTTGCATGGGGGAACTCAGTGGGTGATCTCGTTGCAGATGTTGCGGTCGCCAAGGCCGGACAGCCGGCCATGGCGATGGCCGGCTGCTTTG CAGGACCGATGTTTAACATGCTCGTGGGGCTCGGATCGGCTCTGGTGGTGCAAACGGCTAACGTCTATCCCAAAGCTTACGAACTCAACTTCCACATAAG TATCATAGTTGCTTTTGTTTTCTTGCTTCTTAGCCTGATGGGTTCTCTACTCGTCGTTACGTGGTCCAGGTTTCGAGTTCCAAAGTTTTGGGGGTTCTGC CTGGTCAGCCTTTACGCGGTTTTTGTGGTGGTAAGCTTGTTCGTTGCGACATTATTCGCGTGA
AA sequence Show only first row Show all	>Lus10029938 pacid=23159744 polypeptide=Lus10029938 locus=Lus10029938.g ID=Lus10029938.BGIv1.0 annot-version=v1.0 MNYLKSAFLLCFVLQALILLPSSVHSKDEDEDNLLQGLNSYRQSQSLPILAKHDKAGCLADRVANKLEDQPCPASGRAAAPVVQLSDYPDAMDKCGVDIN KTREGVVLPVCVRKLVPTLVLTNYTQTQYARYLNDSRFVAAGLGSEDDWMVVVLTTGTPGGSFAGAGRLVGLGGVRCWAVSLLVGVLVWNLSTREGASEE NQSWGRVQIFNLGLNLRHGSASRSKKSTDNFLIFHFFFFKSQITEPEEFDHSICPFKKRKPFRCCGNGMAFPSLKFPPQYPILSSTAAISLTLITSLLAA LTTETPHRTNRRSLISQTLNISCATLPPSNGIINYLSIHFCLFNSNSFLSVPSLSLFILLQFYILIKTAQSHFSVVTTKLATHLNLSPSMGGVTLLALGN GAPDVFASLAAVRSGQYRTGFGAILSAGTFVSAFVVGFVAIYAAPFSVDPGSFVRDVGFYLVAALSLFYVYLSGEITFWQAAGFVGFYVFFVGIVFWMDL GIKSSSKGRRDRGDYDAEIMMDFEKVDVERLKASKEEERAAGLLERAFGSLKLHRKEEKSSGFLAKISKIWEVPVMLLLDLTIPQTAPSEWNRLYQSGNI VLCPLALLYACSSIMPLNHPIAFLLSTTHFPLWFVTLLAGSSLALLHFILEKEPPKTEQLPVVLLAFVMSVFWISTTAGELLNCLAALGTILEVAPSLLG LTVLAWGNSVGDLVADVAVAKAGQPAMAMAGCFAGPMFNMLVGLGSALVVQTANVYPKAYELNFHISIIVAFVFLLLSLMGSLLVVTWSRFRVPKFWGFC LVSLYAVFVVVSLFVATLFA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08960		CCX5, AtCXX5, A...	cation calcium exchanger 5, A...		Lus10029938 [exp]	0	1
AT4G39840			unknown protein		Lus10024058 [exp]	1.0	0.8947
AT5G01710			methyltransferases (.1)		Lus10012217 [exp]	4.2	0.8750
AT5G06390		FLA17	FASCICLIN-like arabinogalactan...		Lus10029353 [exp]	4.6	0.8731
AT2G22900			Galactosyl transferase GMA12/M...		Lus10019265 [exp]	4.9	0.8473
AT5G08200			peptidoglycan-binding LysM dom...		Lus10040979 [exp]	5.2	0.8413
AT5G63380			AMP-dependent synthetase and l...		Lus10002791 [exp]	5.3	0.8078
AT5G67470		ATFH6	ARABIDOPSIS FORMIN HOMOLOG 6, ...		Lus10025195 [exp]	6.0	0.8376
AT5G04270			DHHC-type zinc finger family p...		Lus10038701 [exp]	6.8	0.8197
AT4G11090		TBL23	TRICHOME BIREFRINGENCE-LIKE 23...		Lus10032367 [exp]	7.5	0.8558
AT1G01540			Protein kinase superfamily pro...		Lus10007919 [exp]	9.4	0.8377

Compare expression of checked genes

Lus10029938 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.