Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08970 235 / 5e-78 CCAAT NF-YC9, HAP5C "nuclear factor Y, subunit C9", HEME ACTIVATED PROTEIN 5C, nuclear factor Y, subunit C9 (.1.2.3.4) AT1G54830 226 / 1e-74 CCAAT NF-YC3 "nuclear factor Y, subunit C3", nuclear factor Y, subunit C3 (.1.2.3) AT5G63470 205 / 8e-66 CCAAT NF-YC4 "nuclear factor Y, subunit C4", nuclear factor Y, subunit C4 (.1.2) AT3G48590 200 / 3e-64 CCAAT NF-YC1, ATHAP5A, HAP5A "nuclear factor Y, subunit C1", nuclear factor Y, subunit C1 (.1) AT1G56170 196 / 3e-63 CCAAT NF-YC2, ATHAP5B, HAP5B "nuclear factor Y, subunit C2", nuclear factor Y, subunit C2 (.1.2) AT5G50480 139 / 1e-40 CCAAT NF-YC6 "nuclear factor Y, subunit C6", nuclear factor Y, subunit C6 (.1) AT5G27910 121 / 4e-34 CCAAT NF-YC8 "nuclear factor Y, subunit C8", nuclear factor Y, subunit C8 (.1) AT5G50490 110 / 8e-30 CCAAT NF-YC5 "nuclear factor Y, subunit C5", nuclear factor Y, subunit C5 (.1) AT5G50470 109 / 3e-29 CCAAT NF-YC7 "nuclear factor Y, subunit C7", nuclear factor Y, subunit C7 (.1) AT5G38140 98 / 7e-25 CCAAT NF-YC12 "nuclear factor Y, subunit C12", nuclear factor Y, subunit C12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004468 [exp] 403 / 6e-144 AT1G08970 249 / 2e-83 "nuclear factor Y, subunit C9", HEME ACTIVATED PROTEIN 5C, nuclear factor Y, subunit C9 (.1.2.3.4) Lus10021934 [exp] 227 / 1e-74 AT1G08970 250 / 5e-84 "nuclear factor Y, subunit C9", HEME ACTIVATED PROTEIN 5C, nuclear factor Y, subunit C9 (.1.2.3.4) Lus10041221 [exp] 226 / 2e-74 AT1G08970 248 / 2e-83 "nuclear factor Y, subunit C9", HEME ACTIVATED PROTEIN 5C, nuclear factor Y, subunit C9 (.1.2.3.4) Lus10016750 [exp] 192 / 8e-61 AT3G48590 298 / 1e-102 "nuclear factor Y, subunit C1", nuclear factor Y, subunit C1 (.1) Lus10022444 [exp] 191 / 7e-60 AT3G48590 300 / 1e-102 "nuclear factor Y, subunit C1", nuclear factor Y, subunit C1 (.1) Lus10024515 [exp] 116 / 1e-32 AT1G56170 119 / 6e-35 "nuclear factor Y, subunit C2", nuclear factor Y, subunit C2 (.1.2) Lus10008013 [exp] 111 / 9e-31 AT1G54830 112 / 5e-32 "nuclear factor Y, subunit C3", nuclear factor Y, subunit C3 (.1.2.3) Lus10026780 [exp] 59 / 5e-10 AT5G19490 189 / 1e-58 Histone superfamily protein (.1) Lus10030832 [exp] 56 / 1e-09 AT5G43250 147 / 3e-46 "nuclear factor Y, subunit C13", nuclear factor Y, subunit C13 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G035800 [exp] 265 / 6e-89 AT1G08970 246 / 5e-82 "nuclear factor Y, subunit C9", HEME ACTIVATED PROTEIN 5C, nuclear factor Y, subunit C9 (.1.2.3.4) Potri.013G025000 [exp] 252 / 1e-84 AT1G08970 252 / 6e-85 "nuclear factor Y, subunit C9", HEME ACTIVATED PROTEIN 5C, nuclear factor Y, subunit C9 (.1.2.3.4) Potri.010G032301 [exp] 252 / 4e-84 AT1G08970 237 / 1e-78 "nuclear factor Y, subunit C9", HEME ACTIVATED PROTEIN 5C, nuclear factor Y, subunit C9 (.1.2.3.4) Potri.008G203500 [exp] 244 / 4e-81 AT1G08970 241 / 2e-80 "nuclear factor Y, subunit C9", HEME ACTIVATED PROTEIN 5C, nuclear factor Y, subunit C9 (.1.2.3.4) Potri.005G094900 [exp] 211 / 5e-68 AT1G56170 242 / 5e-81 "nuclear factor Y, subunit C2", nuclear factor Y, subunit C2 (.1.2) Potri.007G070900 [exp] 208 / 6e-67 AT1G56170 235 / 3e-78 "nuclear factor Y, subunit C2", nuclear factor Y, subunit C2 (.1.2) Potri.015G097400 [exp] 197 / 8e-63 AT3G48590 314 / 3e-109 "nuclear factor Y, subunit C1", nuclear factor Y, subunit C1 (.1) Potri.012G098500 [exp] 186 / 1e-58 AT3G48590 265 / 4e-90 "nuclear factor Y, subunit C1", nuclear factor Y, subunit C1 (.1) Potri.003G124500 [exp] 114 / 4e-32 AT1G54830 116 / 2e-33 "nuclear factor Y, subunit C3", nuclear factor Y, subunit C3 (.1.2.3) Potri.017G120000 [exp] 115 / 2e-31 AT1G56170 127 / 1e-36 "nuclear factor Y, subunit C2", nuclear factor Y, subunit C2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0012 [flax] [poplar] Histone PF00808 [flax] [poplar] CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone
Representative CDS sequence Show only first row Show all	>Lus10029939 pacid=23159849 polypeptide=Lus10029939 locus=Lus10029939.g ID=Lus10029939.BGIv1.0 annot-version=v1.0 ATGGATCACCACCAGCAAGGACACGGAGGACAGCCTCCAGCTACAGGAGTCACTTCCAGCGCTGCTCAGATGTCCTACCCTTACAATCCGAACCAAATGC AAGTTCCACAAAGCAGCGGAGGACCGGCCACGAGTCAGCACCAAATCGCCTACCAGCAAATCTACAACCAACAACAGCAGCAGCTCCGCCAGCAGCTGCA GTCGTTCTGGGCAAACCAGTACCAAGAGATCGAGAAAGTCACCGACTTCAAGAACCACAGCCTCCCTTTAGCGAGGATCAAGAAGATCATGAAGGCCGAC GAAGACGTGAGGATGATCTCAGCCGAGGCCCCCGTCGTGTTCGCCAGGGCCTGTGAGATGTTCATCCTCGAACTGACCCTTCGTGCGTGGAACCACACGG AGGAGAACAAGAGGAGGACCCTGCAGAAGAACGACATTGCTGCGGCCATCACGAGGACCGACATTTTTGACTTTTTGGTAGACATTGTGCCCCGCGAGGA TTTGAAAGACGAGGTGCTGGCTTCGATCCCGCGTGGGGGAATGGCCGGAGGAGGAGGGAGTTCCGATGCAATGAATTACTGGGCTCATCAGCAGCAGCAG GTGGGGGGGAGTCCCGGGATGATTATGGGGAAGCCGGTTATGGATCCTTCGTCTATGTATGCTCAGCAGCAGGGTATGGCTTCTTACATGGGGCAACCCA TGTGGCCACAGCAGCAAGGGTCGGACCAGCAGCACCCTCAATCGTCTTCCGAGCATCAGTAA
AA sequence Show only first row Show all	>Lus10029939 pacid=23159849 polypeptide=Lus10029939 locus=Lus10029939.g ID=Lus10029939.BGIv1.0 annot-version=v1.0 MDHHQQGHGGQPPATGVTSSAAQMSYPYNPNQMQVPQSSGGPATSQHQIAYQQIYNQQQQQLRQQLQSFWANQYQEIEKVTDFKNHSLPLARIKKIMKAD EDVRMISAEAPVVFARACEMFILELTLRAWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLASIPRGGMAGGGGSSDAMNYWAHQQQQ VGGSPGMIMGKPVMDPSSMYAQQQGMASYMGQPMWPQQQGSDQQHPQSSSEHQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08970	CCAAT	NF-YC9, HAP5C	"nuclear factor Y, subunit C9"...		Lus10029939 [exp]	0	1
AT3G09830			Protein kinase superfamily pro...		Lus10013812 [exp]	5.0	0.7881
AT5G22360		ATVAMP714	vesicle-associated membrane pr...		Lus10043394 [exp]	11.7	0.7518
AT3G47300		SELT	SELT-like protein precursor (....		Lus10018247 [exp]	11.9	0.7474
AT4G35000		APX3	ascorbate peroxidase 3 (.1)		Lus10014128 [exp]	17.9	0.7224
AT5G18140			Chaperone DnaJ-domain superfam...		Lus10020286 [exp]	18.8	0.6877
AT1G29970		RPL18AA	60S ribosomal protein L18A-1 (...		Lus10028130 [exp]	20.0	0.6953
AT4G33940			RING/U-box superfamily protein...		Lus10027921 [exp]	20.0	0.6656
AT3G62190			Chaperone DnaJ-domain superfam...		Lus10038040 [exp]	20.4	0.6800
AT2G36900		ATMEMB11, MEMB1...	membrin 11 (.1.2)		Lus10020302 [exp]	22.2	0.7336
AT2G26660		ATSPX2	ARABIDOPSIS THALIANA SPX DOMAI...		Lus10002018 [exp]	22.3	0.7319

Compare expression of checked genes

Lus10029939 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.