Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05250 224 / 4e-73 RING/U-box superfamily protein (.1) AT2G39100 41 / 0.0004 RING/U-box superfamily protein (.1) AT3G05670 41 / 0.0007 RING/U-box protein (.1) AT4G28270 40 / 0.0008 ATRMA2 RING membrane-anchor 2 (.1) AT5G19430 40 / 0.0009 RING/U-box superfamily protein (.1.2) AT5G12310 40 / 0.001 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004467 [exp] 396 / 7e-141 AT3G05250 288 / 9e-98 RING/U-box superfamily protein (.1) Lus10010911 [exp] 121 / 1e-32 AT3G05250 118 / 4e-31 RING/U-box superfamily protein (.1) Lus10015213 [exp] 45 / 4e-05 AT3G05670 368 / 2e-112 RING/U-box protein (.1) Lus10034165 [exp] 44 / 4e-05 AT2G39100 199 / 6e-62 RING/U-box superfamily protein (.1) Lus10034088 [exp] 42 / 0.0003 AT1G67180 250 / 2e-76 zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein (.1) Lus10031468 [exp] 42 / 0.0004 AT3G05670 343 / 2e-107 RING/U-box protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G035600 [exp] 267 / 5e-90 AT3G05250 308 / 7e-106 RING/U-box superfamily protein (.1) Potri.004G143900 [exp] 45 / 2e-05 AT4G33940 221 / 2e-72 RING/U-box superfamily protein (.1) Potri.005G021000 [exp] 43 / 0.0001 AT3G05670 436 / 2e-140 RING/U-box protein (.1) Potri.013G011400 [exp] 42 / 0.0002 AT3G05670 417 / 7e-133 RING/U-box protein (.1) Potri.006G193600 [exp] 41 / 0.0006 AT3G58030 389 / 2e-132 RING/U-box superfamily protein (.1.2.3.4) Potri.014G139400 [exp] 40 / 0.0008 AT3G58720 163 / 3e-49 RING/U-box superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10029940 pacid=23159795 polypeptide=Lus10029940 locus=Lus10029940.g ID=Lus10029940.BGIv1.0 annot-version=v1.0 ATGGAGGACGAGAAGACTTCTTCATCTTCGACTTCACAGGACGCAAGCGGCGGCCATTGTTGCCCTATCTGCTTGGGGTTGTTCATCCAAGAGTCCTATC TCGTCACCTGTTTCCACAAGTTCTGTTTCAAATGCATCTTGCAGTGGTCTAAAGTGGTGGCTGGGAAGCATTCTGGAGCCCAGTCTTCAGTTAAATGCCC TTTGTGCAAGGTTAGATCTGACTCGGCGTTCTTCACCAAAGCGCACAAGTATAGATTACAAAGTTATTACACTGAACGAGGTGTTCTCAGTGAGGTAGTC AACGTGCAGCGGTATTGGAAGTCGAATAAGTACCTTCAGCCAAATCAATGGCTCCAACGTTGGTTAACTAGAGAAATCCAGGCTCTACTTCAGGTAGAAG ATGTTGATGTCATTGTTCGTCATATCCTAGGTGCGATTGAATCTTTCATAAGAAGATCGAATCATCGTTTGATTCGAAAATCTGCAGCCTTTATCTTGTG CAAAGACGATCACTCTCAGTACAAGAAACCACCAGAAGCAAAGCAGCAGGAGTTCAAAGCTCTGGTAGCAGATGCAGCGAGGCCTTTCGTAGCAGCAAGA ACAGCGCGATTCATAGATGAATTGCAATTCTTTCTTGCGTCGGGATGGAATGTCAATGGCTACGATGAAGTCTACACACAACAGTTGGGCGGGAACATCC CTGGAATCAGCAGGATGGTTCGAGAAGAAGAAGACATATGA
AA sequence Show only first row Show all	>Lus10029940 pacid=23159795 polypeptide=Lus10029940 locus=Lus10029940.g ID=Lus10029940.BGIv1.0 annot-version=v1.0 MEDEKTSSSSTSQDASGGHCCPICLGLFIQESYLVTCFHKFCFKCILQWSKVVAGKHSGAQSSVKCPLCKVRSDSAFFTKAHKYRLQSYYTERGVLSEVV NVQRYWKSNKYLQPNQWLQRWLTREIQALLQVEDVDVIVRHILGAIESFIRRSNHRLIRKSAAFILCKDDHSQYKKPPEAKQQEFKALVADAARPFVAAR TARFIDELQFFLASGWNVNGYDEVYTQQLGGNIPGISRMVREEEDI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05250			RING/U-box superfamily protein...		Lus10029940 [exp]	0	1
AT2G39370		MAKR4	MEMBRANE-ASSOCIATED KINASE REG...		Lus10030311 [exp]	3.9	0.7606
AT4G29170		ATMND1	Mnd1 family protein (.1.2)		Lus10002503 [exp]	13.0	0.7313
AT5G58005			Cytochrome c oxidase, subunit ...		Lus10036285 [exp]	15.2	0.7181
AT2G24990			Serine/threonine-protein kinas...		Lus10032627 [exp]	16.3	0.7414
AT2G11520		CRCK3	calmodulin-binding receptor-li...		Lus10041796 [exp]	19.4	0.7330
AT1G78790			unknown protein		Lus10042781 [exp]	20.3	0.6846
AT5G42470			unknown protein		Lus10033139 [exp]	21.4	0.6957
AT2G17020			F-box/RNI-like superfamily pro...		Lus10022651 [exp]	21.5	0.6971
AT5G48840		ATPTS, PANC	ARABIDOPSIS THALIANA PANTOTHEN...		Lus10025932 [exp]	25.0	0.7290
AT1G19270		DA1	DA1 (.1)		Lus10032736 [exp]	32.2	0.7087

Compare expression of checked genes

Lus10029940 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.