Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08980 539 / 0 ATTOC64-I, ATAMI1 ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-I, AMIDASE-LIKE PROTEIN 1, amidase 1 (.1) AT3G17970 384 / 9e-129 ATTOC64-III translocon at the outer membrane of chloroplasts 64-III (.1) AT5G09420 374 / 1e-124 MTOM64, ATTOC64-V, AtmtOM64 outer membrane 64, ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-V, translocon at the outer membrane of chloroplasts 64-V (.1) AT3G25660 80 / 6e-16 Amidase family protein (.1) AT5G07360 71 / 6e-13 Amidase family protein (.1.2) AT5G64440 68 / 5e-12 ATFAAH fatty acid amide hydrolase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004466 [exp] 790 / 0 AT1G08980 549 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-I, AMIDASE-LIKE PROTEIN 1, amidase 1 (.1) Lus10042001 [exp] 388 / 6e-130 AT3G17970 714 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Lus10018004 [exp] 380 / 5e-127 AT3G17970 711 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Lus10009050 [exp] 365 / 2e-120 AT3G17970 675 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Lus10009682 [exp] 362 / 1e-119 AT3G17970 700 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Lus10016685 [exp] 80 / 9e-16 AT5G64440 453 / 2e-152 fatty acid amide hydrolase (.1) Lus10020781 [exp] 76 / 2e-14 AT3G25660 780 / 0.0 Amidase family protein (.1) Lus10007361 [exp] 75 / 3e-14 AT3G25660 795 / 0.0 Amidase family protein (.1) Lus10043019 [exp] 72 / 4e-13 AT5G07360 858 / 0.0 Amidase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G024200 [exp] 602 / 0 AT1G08980 519 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-I, AMIDASE-LIKE PROTEIN 1, amidase 1 (.1) Potri.013G024100 [exp] 592 / 0 AT1G08980 518 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-I, AMIDASE-LIKE PROTEIN 1, amidase 1 (.1) Potri.012G046900 [exp] 406 / 2e-137 AT3G17970 744 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Potri.015G038600 [exp] 403 / 8e-136 AT3G17970 747 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Potri.001G205300 [exp] 383 / 4e-128 AT5G09420 724 / 0.0 outer membrane 64, ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-V, translocon at the outer membrane of chloroplasts 64-V (.1) Potri.005G070300 [exp] 91 / 3e-19 AT5G64440 488 / 1e-166 fatty acid amide hydrolase (.1) Potri.007G098600 [exp] 87 / 3e-18 AT5G64440 478 / 2e-162 fatty acid amide hydrolase (.1) Potri.018G086350 [exp] 77 / 6e-15 AT3G25660 766 / 0.0 Amidase family protein (.1) Potri.015G109400 [exp] 69 / 2e-12 AT5G07360 823 / 0.0 Amidase family protein (.1.2) Potri.001G285900 [exp] 66 / 2e-11 AT5G64440 769 / 0.0 fatty acid amide hydrolase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01425 [flax] [poplar] Amidase Amidase
Representative CDS sequence Show only first row Show all	>Lus10029941 pacid=23159715 polypeptide=Lus10029941 locus=Lus10029941.g ID=Lus10029941.BGIv1.0 annot-version=v1.0 ATGGCAAACAGCTCAGAAGACAATGGAGCTTTCATGGAGAAATTCGTGATAGAGCCGCCGCCGCCGAGTTCTTCAGATCATCAGCTCCCTCCTCTACAGG GTCTCACTTTTGCTGTTAAAGACATATTTGACGTGACAGGATATGTGACGGGGTTTGGTAATCCTGATTGGGCAAGGACTCATTCAGCTGCAACTTCAAC TGCTCCAGCTGTGTTGGATGTCTTGAAGGATGGGGCTATCTCCATCGGCAAAACCGTCATGGATGAAATGGCTTACAGCATTAATGGAGAGAACATACAC TACGGAACACCAGTGAATCCATGTGCTGCAGATCGGGTACCCGGTGGATCATCCAGTGGGTCAGCTGTAGCAGTTGGTGCAGCTCTTGTAGATTTCTCAT TAGGGACCGACACTGGAGGCAGTGTGAGAGTTCCTGCATCGTACTGTGGAATCTTCGGGTTCCGACCTTCACATGATGCTGTTTCTACCTCTGGAGTCAT TCCCATGGCACAAAGTTTCGACACCGTCGGATGGTTTGCCAGGGATCCATCGATCTTGAAACGAGTTGGACAGTCATTTCTACATTTGCATGATCAGCAT GCTGTGGTCCCTAGCCAGGTGATTATAGCAGATGATTGCTTCCAGCTTTCGAGCATTCCACAAGACCGAGTCGCCCAAGTTCTCATCAATTCCGTCGAGA AGCTTTATGGAGCAAATGTTGTTAAGCACGCAATGATTGGAGACTATGTTGAAGAAAAAGTTCCTAGCTTGGTGCATTTCATTAGTAAAGAAACCAAGAA TCAAGAACACAACATACCATCATTGGCAGCACTCTCGACCGCCATGCGCCTGCTCCAAAGGTACGAATTCAAGAACAATCATGGCGAGTGGGTTAGTAAA GTGAAGCCTGATCTGGGTCCAGGGCTAGCTGAGAGGATACTGGAAGCTGTGCAAACAACAGTCGAACCCGAGAACGTAGATCAGTGTCGATCTGTGAAAG CTGAACTACAAAACGCTCTTTCAGCTCTTCTCGGGGACTCGGGGATCCTTGCCATCCCAACAGTTCCAGGGCCTCCACCGAAGCTGCAGACTGACGCGAG CACACTCGAAGGATTTCGGGCTAGGGCTTTCAGTCTACTGTCCATTGCTGGAGTATCAGGATTCTGCCAGGTGAGCATACCACTAGGGATGCACGAAGAT CTCCCGGTATCGGTCTCTTTGCTTGCGAAACAAGGTCAGGATGGTTTCCTCCTAGACGTGGTTCAGAATCTTTATGAAACCATCACAGAACATGCTCCTG TTCTGAACTAG
AA sequence Show only first row Show all	>Lus10029941 pacid=23159715 polypeptide=Lus10029941 locus=Lus10029941.g ID=Lus10029941.BGIv1.0 annot-version=v1.0 MANSSEDNGAFMEKFVIEPPPPSSSDHQLPPLQGLTFAVKDIFDVTGYVTGFGNPDWARTHSAATSTAPAVLDVLKDGAISIGKTVMDEMAYSINGENIH YGTPVNPCAADRVPGGSSSGSAVAVGAALVDFSLGTDTGGSVRVPASYCGIFGFRPSHDAVSTSGVIPMAQSFDTVGWFARDPSILKRVGQSFLHLHDQH AVVPSQVIIADDCFQLSSIPQDRVAQVLINSVEKLYGANVVKHAMIGDYVEEKVPSLVHFISKETKNQEHNIPSLAALSTAMRLLQRYEFKNNHGEWVSK VKPDLGPGLAERILEAVQTTVEPENVDQCRSVKAELQNALSALLGDSGILAIPTVPGPPPKLQTDASTLEGFRARAFSLLSIAGVSGFCQVSIPLGMHED LPVSVSLLAKQGQDGFLLDVVQNLYETITEHAPVLN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08980		ATTOC64-I, ATAM...	ARABIDOPSIS THALIANA TRANSLOCO...		Lus10029941 [exp]	0	1
AT5G27290			unknown protein		Lus10033822 [exp]	2.8	0.9427
AT1G74710		ATICS1, SID2, E...	SALICYLIC ACID INDUCTION DEFIC...		Lus10023622 [exp]	4.7	0.9110
AT5G37360			unknown protein		Lus10004762 [exp]	4.9	0.9398
AT5G27290			unknown protein		Lus10018966 [exp]	5.3	0.9387
AT1G32540		LOL1	lsd one like 1 (.1.2.3)		Lus10035361 [exp]	5.8	0.9159
AT3G10060			FKBP-like peptidyl-prolyl cis-...		Lus10027729 [exp]	7.1	0.9413
AT3G59780			Rhodanese/Cell cycle control p...		Lus10025587 [exp]	7.7	0.9375
AT4G31115			Protein of unknown function (D...		Lus10026864 [exp]	8.4	0.9364
AT4G12830			alpha/beta-Hydrolases superfam...		Lus10002142 [exp]	8.7	0.9378
AT1G08070		EMB3102, OTP82	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10033026 [exp]	9.5	0.9031

Compare expression of checked genes

Lus10029941 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.