Plant FIBer expression Database

Lus10029943 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G00893 81 / 4e-16 unknown protein
AT1G57790 79 / 2e-15 F-box family protein (.1)
AT4G12370 74 / 5e-14 unknown protein
AT4G10660 72 / 2e-13 CDC68-related (.1)
AT4G10695 69 / 5e-13 CDC68-related (.1)
AT1G49360 67 / 2e-11 F-box family protein (.1)
AT3G18720 63 / 3e-10 F-box family protein (.1)
AT3G56470 62 / 6e-10 F-box family protein (.1)
AT4G12382 50 / 3e-07 F-box family protein (.1.2)
AT4G10700 52 / 5e-07 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10004476
[exp]
927 / 0 AT1G57790 92 / 4e-20 F-box family protein (.1)
Lus10029926
[exp]
273 / 4e-88 AT1G57790 72 / 4e-15 F-box family protein (.1)
Lus10042359
[exp]
229 / 2e-71 ND /
Lus10035341
[exp]
149 / 1e-41 ND /
Lus10024904
[exp]
122 / 9e-29 AT1G57790 97 / 2e-21 F-box family protein (.1)
Lus10021792
[exp]
91 / 2e-19 ND /
Lus10019204
[exp]
87 / 2e-18 AT1G57790 79 / 2e-16 F-box family protein (.1)
Lus10014208
[exp]
72 / 4e-13 AT1G57790 286 / 2e-94 F-box family protein (.1)
Lus10021352
[exp]
71 / 1e-12 AT1G57790 292 / 1e-96 F-box family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G106800
[exp]
163 / 7e-44 AT1G57790 99 / 6e-23 F-box family protein (.1)
Potri.016G079300
[exp]
78 / 4e-15 AT1G57790 313 / 5e-105 F-box family protein (.1)
Potri.012G106750
[exp]
65 / 5e-11 AT1G57790 57 / 7e-09 F-box family protein (.1)
Potri.006G212600
[exp]
63 / 2e-10 AT1G57790 294 / 2e-97 F-box family protein (.1)
Potri.006G015601
[exp]
45 / 0.0001 AT4G22660 59 / 3e-09 F-box family protein with a domain of unknown function (DUF295) (.1)
PFAM info
Representative CDS sequence
>Lus10029943 pacid=23159890 polypeptide=Lus10029943 locus=Lus10029943.g ID=Lus10029943.BGIv1.0 annot-version=v1.0
ATGGAGTCATTCTGGTTACCAAGTTTACGGGGGTTCACCGGAGTGCTCTCCGGCGCAGTCTCTACTTTTCTGAGCAGTATTGTTGTCGTGTTGATGACCT
GCGGGGACACAAGCTCCAAGAAGGTGAGCTTTCTATTCTGTAAATTGGGCGACGACAACTGGACGAAACAAGATGAAGTAGACGGAGCGCGATGTATTTG
TCAGGATTACAATCCGGATAACCAAACTTTCCCGAGATTCAGAGTTATGGCCAGCTTTGATGACCAGATCTATGTTATTTCTAGCTGCTGTAGAACCCTT
TGCAAATTCCAGTTCGATGAGGAGCATTGTTCTATCAGGTTACTTGACTTAAACCTGAGGAAACCTGACACGTATGAGAACCTCATCAATATAACCTTCT
ACCCCATTATGTCTCTCGTTCAGTACTCACAAACGGAGCTTATGATTGTTGAGATATACGCGAATGGCTACAGGGAAGATATCGGCGTCTTTGACAATGA
TTGCAGAGGCGTTGAGTTGTACACGGTGAACTTGCAAGATAAAGTGTGGACAAGGCTTCAAACTCTGCCTCAAGATACTGCAGTCTTCATAGGAACTAAT
TTCAGCAATATCCTTCTCTGCAATGGTGTCCGCGGTGGGAACACCGTTTACTTCAAGCGCAGTAATGACAAGTATCTCTACGCGTATGATGTTCGGGAGA
AAAGTATAACCGTTTCGTTGCCATCGCCGGATGTTAAGCATTATGTCCTCCAAGCTGTATGGGTGCCGCCTCTCTGTTCTTTGTCCTCCACGGTAGATGA
TGGTGATGCTGATACCAGAATGCAGGTGAGGGAAACGATGATAGTGGTGTCCGAAGATCGGTGGTGCAACATCCCAATTCACCTTCTTAGCTATATACAG
TCGCTTCTGTTTGGAGCGGACCGGTGCTGCTTCAGCCTTGTCTGCAAGACATGGCAATTGGCATTCTCCGCAGAAACCACCTCAATGACGAATATGGGAG
GTCACGGATTCCCGATGCTCCTACACATAGGGAATAATTATGACCATCGAGTCAGTATCTTTGACCCGATAACTAACTCCAGGTCAACATTGCATGCCCC
TGATTTGGTCGAGGGAGTCATACGTTGCTCGAAGCACGGATGGTTACTTGTAACAGAAGGAAGCTACGGTACACGTATCTTCTTCTACAACCCTTTCACC
GAACAAAGGATTGATCTTCCGAAATTGCTTACAAGTAAGTATAACTTTGACGGGATCACCTTCACTTCACCTCCAACCTCCCCTGACTGCATGGTTTTCG
GCTACTCAATCTCATCACCGGATGTGACACTTAGTTATCTTTATCGAGGAAAAGATACATGGCTAAACTGTGAAATGGGTATCGATAAGATTGGTAGCCA
TAAGTCGTACGCTAATCTTGTTTACCACCGAGGGAAATTCTGTTTCATACCAAAACAAAGATATCCAGACTTCACTAGTCAGCCTTGTAGCTCAATGAGA
AGAACCAATGTGGTAGAGTGCGATGGGAAACTCCTATTAGTTGCTACCGCTCACCTCGGAAGGTTCGTGCAAGTTTTTGAGCTCAATGAAGATGACATGG
TAGGGGAAGATGAGTTGGTGCAAGTTCTGGAGCTCAATGAAGATGCCATGGTTGGGAAAGAACTCGACAATCTGGGAGACATGATGTTGTTTGTGAGCTC
AGGTGGTTCTACCTTATCAGCGACGTGTAAGGGAGTTGAGATCTCAGGGTTGGGAAATAAGGTGTTTTTGGATAGGTTTAATGGTGAAGATGGAGTGTTT
TATTCTCTAGCAACCAAAAAGTTCCATACTTTCTGGAGCGGATACAATAGTCATGATTGGTGCGACACTAAAGAATATACCCACCGTGATTGGATCCAAC
CCAACTTCGAAGTGCACACAGAAGAACAACTCCAATGGGTTTGA
AA sequence
>Lus10029943 pacid=23159890 polypeptide=Lus10029943 locus=Lus10029943.g ID=Lus10029943.BGIv1.0 annot-version=v1.0
MESFWLPSLRGFTGVLSGAVSTFLSSIVVVLMTCGDTSSKKVSFLFCKLGDDNWTKQDEVDGARCICQDYNPDNQTFPRFRVMASFDDQIYVISSCCRTL
CKFQFDEEHCSIRLLDLNLRKPDTYENLINITFYPIMSLVQYSQTELMIVEIYANGYREDIGVFDNDCRGVELYTVNLQDKVWTRLQTLPQDTAVFIGTN
FSNILLCNGVRGGNTVYFKRSNDKYLYAYDVREKSITVSLPSPDVKHYVLQAVWVPPLCSLSSTVDDGDADTRMQVRETMIVVSEDRWCNIPIHLLSYIQ
SLLFGADRCCFSLVCKTWQLAFSAETTSMTNMGGHGFPMLLHIGNNYDHRVSIFDPITNSRSTLHAPDLVEGVIRCSKHGWLLVTEGSYGTRIFFYNPFT
EQRIDLPKLLTSKYNFDGITFTSPPTSPDCMVFGYSISSPDVTLSYLYRGKDTWLNCEMGIDKIGSHKSYANLVYHRGKFCFIPKQRYPDFTSQPCSSMR
RTNVVECDGKLLLVATAHLGRFVQVFELNEDDMVGEDELVQVLELNEDAMVGKELDNLGDMMLFVSSGGSTLSATCKGVEISGLGNKVFLDRFNGEDGVF
YSLATKKFHTFWSGYNSHDWCDTKEYTHRDWIQPNFEVHTEEQLQWV

DESeq2's median of ratios [FLAX]

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Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G57790 F-box family protein (.1) Lus10029943
[exp]
0 1

Lus10029943 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.