Plant FIBer expression Database

Lus10029944 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G57450 79 / 8e-19 ATXRCC3, XRCC3 ARABIDOPSIS THALIANA HOMOLOG OF X-RAY REPAIR CROSS COMPLEMENTING 3 \(XRCC3\), homolog of X-ray repair cross complementing 3 (XRCC3) (.1), homolog of X-ray repair cross complementing 3 (XRCC3) (.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10004464
[exp]
134 / 5e-40 AT5G57450 325 / 2e-111 ARABIDOPSIS THALIANA HOMOLOG OF X-RAY REPAIR CROSS COMPLEMENTING 3 \(XRCC3\), homolog of X-ray repair cross complementing 3 (XRCC3) (.1), homolog of X-ray repair cross complementing 3 (XRCC3) (.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G093100
[exp]
96 / 6e-25 AT5G57450 312 / 1e-106 ARABIDOPSIS THALIANA HOMOLOG OF X-RAY REPAIR CROSS COMPLEMENTING 3 \(XRCC3\), homolog of X-ray repair cross complementing 3 (XRCC3) (.1), homolog of X-ray repair cross complementing 3 (XRCC3) (.2)
PFAM info
Representative CDS sequence
>Lus10029944 pacid=23159891 polypeptide=Lus10029944 locus=Lus10029944.g ID=Lus10029944.BGIv1.0 annot-version=v1.0
ATGTTTAAGTTGGCGGTGGTAGTAACTAATCAGGTTGTGGATTATGTTGGAAATGGAGTGAATGGCGTGAAAGTTGGGAATCTAGGGTGTATGTATTCGT
CTGGGAGGAGTGTTTTGCCTGCTTTAGGATTGGCTTGGTCGAATTGTGTGAACTCGAGGGTGTTCTTGTCGAGATCCGAGGATGAGAAGGGGAGTGGAAC
TGAAGTTGGTGAAGGAAATGGTGGTCATGGGAGGACGAGACGATGGCTTCATCTCGTTTTTGCGCCTCATTTGCCGCCTTCGTCATGTGAGTTTGTGATA
AGAAGAGAAGGAGTGTCTGGCATTGAGAGATGA
AA sequence
>Lus10029944 pacid=23159891 polypeptide=Lus10029944 locus=Lus10029944.g ID=Lus10029944.BGIv1.0 annot-version=v1.0
MFKLAVVVTNQVVDYVGNGVNGVKVGNLGCMYSSGRSVLPALGLAWSNCVNSRVFLSRSEDEKGSGTEVGEGNGGHGRTRRWLHLVFAPHLPPSSCEFVI
RREGVSGIER

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G57450 ATXRCC3, XRCC3 ARABIDOPSIS THALIANA HOMOLOG O... Lus10029944
[exp]
0 1
AT4G25030 unknown protein Lus10033276
[exp]
10.7 0.7473
AT3G11890 Sterile alpha motif (SAM) doma... Lus10021086
[exp]
11.8 0.7630
AT5G44980 F-box/RNI-like/FBD-like domain... Lus10008502
[exp]
22.4 0.6332
AT5G64920 CIP8 COP1-interacting protein 8 (.1... Lus10031422
[exp]
24.7 0.7122
Lus10031119
[exp]
31.5 0.5789
AT1G29970 RPL18AA 60S ribosomal protein L18A-1 (... Lus10028130
[exp]
33.2 0.6670
AT3G26600 ARO4 armadillo repeat only 4 (.1) Lus10026695
[exp]
37.1 0.6806
AT2G46500 UBDKGAMMA4, ATP... UBIQUITIN-LIKE DOMAIN KINASE G... Lus10004005
[exp]
37.9 0.6744
Lus10018551
[exp]
39.6 0.6770
AT2G31820 Ankyrin repeat family protein ... Lus10008329
[exp]
41.4 0.6378

Lus10029944 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.