Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51550 416 / 6e-135 FER FERONIA, Malectin/receptor-like protein kinase family protein (.1) AT5G39000 382 / 3e-122 Malectin/receptor-like protein kinase family protein (.1) AT5G38990 374 / 1e-118 Malectin/receptor-like protein kinase family protein (.1) AT5G28680 363 / 6e-115 ANX2 ANXUR2, Malectin/receptor-like protein kinase family protein (.1) AT3G04690 357 / 8e-113 ANX1 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) AT1G30570 307 / 1e-93 HERK2 hercules receptor kinase 2 (.1) AT5G54380 287 / 3e-86 THE1 THESEUS1, protein kinase family protein (.1) AT5G59700 280 / 8e-84 Protein kinase superfamily protein (.1) AT2G39360 273 / 3e-81 Protein kinase superfamily protein (.1) AT3G46290 265 / 3e-78 HERK1 hercules receptor kinase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032971 [exp] 832 / 0 AT3G51550 706 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Lus10032976 [exp] 812 / 0 AT3G51550 682 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Lus10003942 [exp] 794 / 0 AT3G51550 656 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Lus10014185 [exp] 437 / 7e-143 AT3G51550 1254 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Lus10022728 [exp] 401 / 2e-129 AT3G51550 1184 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Lus10016907 [exp] 357 / 1e-112 AT3G04690 967 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) Lus10042537 [exp] 330 / 9e-103 AT3G04690 942 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) Lus10021632 [exp] 291 / 2e-87 AT5G61350 971 / 0.0 Protein kinase superfamily protein (.1) Lus10017478 [exp] 286 / 1e-85 AT4G39110 1149 / 0.0 Malectin/receptor-like protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G097001 [exp] 447 / 3e-149 AT3G51550 506 / 2e-168 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.016G138700 [exp] 447 / 8e-147 AT3G51550 1252 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.006G110000 [exp] 446 / 2e-146 AT3G51550 1256 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.008G105500 [exp] 419 / 3e-136 AT3G04690 999 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) Potri.017G096600 [exp] 419 / 1e-135 AT3G51550 829 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.017G096800 [exp] 415 / 5e-135 AT3G51550 823 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.010G145600 [exp] 412 / 1e-133 AT3G04690 1027 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) Potri.017G096000 [exp] 412 / 3e-133 AT3G51550 832 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.017G095900 [exp] 410 / 2e-132 AT3G51550 845 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.005G055200 [exp] 377 / 4e-120 AT5G28680 1026 / 0.0 ANXUR2, Malectin/receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10029945 pacid=23159801 polypeptide=Lus10029945 locus=Lus10029945.g ID=Lus10029945.BGIv1.0 annot-version=v1.0 ATGAAGACATCATTGGGCACACACGTCTGTCTATCTTCCCTTTTCCTTGCCCTTTCTATTATCCATCATCATCATCTCGCCTCTGCTTCCGACAGGTACA AACCAGTCGATCGTATATTCGTGGACTGCGGTTTCAATACGGTGGGAACCGATGACGACCTGCTGAATTGGGGGTCGGACTACAGCACCTCAAAATACCT CCGAGTGGAAGATGATGGGGCATCAGTCTCCACAACACAAGACCCTTCGGCTTACCTCCCAATGGTCCCATACAGAACCGCACGGTTGTCTCGTTCCCAA TTCACCTACGCCTTCCCCGTCACCTCCGGCCAGAAATCAGCCGCCTCTTTCTCCGTCAGAGCTGGCAGATTCACCCTCCTCAACAACTTCAGCGTAGAGC TCCACGCTCGAGCTCTCGGTCACGATGGGTTTCACATGGAGTTCTGCTTAAACGTGGAACCAGATCAGCACCTTCTAAACCTAACCTTCGCTCCCACTCC GAACGCGAGCACCTACGCTTTCATCAATGGAATTGAAGTCGTCTCCATGCCCACAAATCTATACTACACCAACGAGGACAATGCTGTAGGGCCCCTATCG ATCGGAACTAATACTAATCAGCGGATCGAAAATGGCACCGCACTGCAGCTAATGTACAGAGTCAATGTCGGAGGCAGTTACATCGGTCCCAGATGCGACA CCGGTATGTATCGAAGATGGGAGTCTGACCCGAGCTCGGATAAGTATTTCGTAGATGCTCCAAGCTCTCTTTTTTGCAACACCTCGATTCAACTTAATTA CGGGGGCAGAGACGAGATTCATCAGGTAGCGGCCCCTGATCAAGTCTACCAAACTGCCCGCGGCATGTCTTACAACATCACCATAAACCGCAGCTACAAC CTCACCTGGAAGTTTGAGGTTGACCCCTCGTTCACATATTTCGTTCGGCTCCATGTTAGCCAGTTCAATATGACTTTCTTTGTCAATATCTTGAATCAAA CAGCTGGGGGTTATGTGGATGTCATTCAGAAAGCTGGTGGAAACGGAATCCCTCTGTTCAAAGATTACTTGACGAGAATGGAAGCAGCTGAGAATAAGAA CCTCTTTATCTCTCTTTCTTGTTTCGAGAAGCGGAGCGCCTACCTCAATGGAGTTGAGATCTACAAATTGAGCTCATCCGACAATAATCTAGCCGGACCC AACCCTGACTTGCTGCCGCTTCAACTGCGGTCGAAATCCGATAGAAACTGGACTAAAATAGTCGCTGCTGTAGCTGGCGGCATTCTTTCAGGCAGAAGCG GAAAGTTGAGGGCCGAAACGTTGGAGGCTCTGTTTCTCCTTCTACAGGGCTTGCAAAATTTTCTTTTCATCGAATCAAACAGCTTGACATATTCCAAATA CTCGGCTGTTTGCCGCCGATTTTCACTAACCGAGATCAAACGTGCTACCCGGAATTTCGACGAAGTTTTCAAAATCGGAGTCGGAGGGTTCGGCAACGTG TACAAAGGAATAATCAGCGACGGCGGAAAGGTGGCCATCAAGAGGCTGAACCCAGGGTCACAGCAAGGCGCCAACGAGTTCAAAACGGAGATCGAGATGC TCTCCCAGCTCAGACATATTAACCTCGTATCCCTACTTGGATACTGCTATGAAGATGGTGAGATGATCCTGGTGTACGATTACATGTCCAACGGCACACT CCAGGATCACCTCTACAAGACTGATAACACTAACCCTCCAATTCCGTGGAAACAACGGCTAGAGATCTGCATCTGTGCTGCTCGAGGGCTTCACTACCTT CATTCGGGAACCGGCAAAAGCATCATCCATCGCGACGTTAAGACTACAAACATCTTGCTGGACGAGAAGTAG
AA sequence Show only first row Show all	>Lus10029945 pacid=23159801 polypeptide=Lus10029945 locus=Lus10029945.g ID=Lus10029945.BGIv1.0 annot-version=v1.0 MKTSLGTHVCLSSLFLALSIIHHHHLASASDRYKPVDRIFVDCGFNTVGTDDDLLNWGSDYSTSKYLRVEDDGASVSTTQDPSAYLPMVPYRTARLSRSQ FTYAFPVTSGQKSAASFSVRAGRFTLLNNFSVELHARALGHDGFHMEFCLNVEPDQHLLNLTFAPTPNASTYAFINGIEVVSMPTNLYYTNEDNAVGPLS IGTNTNQRIENGTALQLMYRVNVGGSYIGPRCDTGMYRRWESDPSSDKYFVDAPSSLFCNTSIQLNYGGRDEIHQVAAPDQVYQTARGMSYNITINRSYN LTWKFEVDPSFTYFVRLHVSQFNMTFFVNILNQTAGGYVDVIQKAGGNGIPLFKDYLTRMEAAENKNLFISLSCFEKRSAYLNGVEIYKLSSSDNNLAGP NPDLLPLQLRSKSDRNWTKIVAAVAGGILSGRSGKLRAETLEALFLLLQGLQNFLFIESNSLTYSKYSAVCRRFSLTEIKRATRNFDEVFKIGVGGFGNV YKGIISDGGKVAIKRLNPGSQQGANEFKTEIEMLSQLRHINLVSLLGYCYEDGEMILVYDYMSNGTLQDHLYKTDNTNPPIPWKQRLEICICAARGLHYL HSGTGKSIIHRDVKTTNILLDEK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Lus10029945 [exp]	0	1
AT4G08850			Leucine-rich repeat receptor-l...		Lus10005016 [exp]	2.0	0.9338
AT3G57240		BG3	"beta-1,3-glucanase 3", beta-1...		Lus10027859 [exp]	3.5	0.8762
AT5G60900		RLK1	receptor-like protein kinase 1...		Lus10031804 [exp]	3.9	0.9193
AT4G08850			Leucine-rich repeat receptor-l...		Lus10005017 [exp]	4.2	0.9241
AT5G26170	WRKY	ATWRKY50, WRKY5...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10006848 [exp]	6.0	0.8996
AT1G71400		AtRLP12	receptor like protein 12 (.1)		Lus10014910 [exp]	7.1	0.9058
AT1G71890		SUC5, ATSUC5	SUCROSE-PROTON SYMPORTER 5, Ma...		Lus10018915 [exp]	8.5	0.9144
AT5G51160			Ankyrin repeat family protein ...		Lus10029007 [exp]	10.2	0.8488
AT5G10770			Eukaryotic aspartyl protease f...		Lus10000265 [exp]	11.0	0.8780
AT4G08850			Leucine-rich repeat receptor-l...		Lus10019036 [exp]	11.4	0.8781

Compare expression of checked genes

Lus10029945 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.