Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54820 439 / 7e-151 Protein kinase superfamily protein (.1) AT3G58690 376 / 4e-127 Protein kinase superfamily protein (.1) AT4G02010 288 / 2e-89 Protein kinase superfamily protein (.1) AT5G18610 276 / 7e-87 Protein kinase superfamily protein (.1.2) AT5G02800 272 / 7e-87 CDL1 CDG1-like 1, Protein kinase superfamily protein (.1) AT2G20300 281 / 1e-86 ALE2 Abnormal Leaf Shape 2, Protein kinase superfamily protein (.1) AT3G20530 270 / 5e-86 Protein kinase superfamily protein (.1) AT3G07070 268 / 5e-85 Protein kinase superfamily protein (.1) AT5G13160 269 / 7e-85 PBS1 avrPphB susceptible 1, Protein kinase superfamily protein (.1) AT5G56890 280 / 1e-83 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004461 [exp] 805 / 0 AT1G54820 465 / 4e-161 Protein kinase superfamily protein (.1) Lus10033606 [exp] 361 / 3e-121 AT3G58690 606 / 0.0 Protein kinase superfamily protein (.1) Lus10017647 [exp] 357 / 1e-119 AT3G58690 597 / 0.0 Protein kinase superfamily protein (.1) Lus10040050 [exp] 280 / 4e-90 AT3G20530 555 / 0.0 Protein kinase superfamily protein (.1) Lus10041426 [exp] 278 / 3e-89 AT5G18610 582 / 0.0 Protein kinase superfamily protein (.1.2) Lus10015756 [exp] 281 / 4e-89 AT5G13160 732 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Lus10012814 [exp] 279 / 5e-88 AT5G18610 807 / 0.0 Protein kinase superfamily protein (.1.2) Lus10033966 [exp] 279 / 5e-88 AT5G18610 805 / 0.0 Protein kinase superfamily protein (.1.2) Lus10019621 [exp] 275 / 6e-88 AT3G20530 536 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G025700 [exp] 508 / 2e-178 AT1G54820 438 / 7e-152 Protein kinase superfamily protein (.1) Potri.005G036600 [exp] 491 / 1e-171 AT1G54820 434 / 4e-150 Protein kinase superfamily protein (.1) Potri.014G143100 [exp] 387 / 1e-131 AT3G58690 573 / 0.0 Protein kinase superfamily protein (.1) Potri.003G166900 [exp] 283 / 4e-90 AT5G13160 745 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.014G119100 [exp] 289 / 2e-89 AT4G02010 993 / 0.0 Protein kinase superfamily protein (.1) Potri.010G021500 [exp] 282 / 3e-89 AT5G18610 779 / 0.0 Protein kinase superfamily protein (.1.2) Potri.002G254600 [exp] 287 / 2e-88 AT2G20300 947 / 0.0 Abnormal Leaf Shape 2, Protein kinase superfamily protein (.1) Potri.008G205700 [exp] 280 / 2e-88 AT5G18610 783 / 0.0 Protein kinase superfamily protein (.1.2) Potri.001G060800 [exp] 278 / 2e-88 AT5G13160 714 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.004G018500 [exp] 275 / 5e-88 AT3G20530 473 / 2e-167 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10029948 pacid=23159781 polypeptide=Lus10029948 locus=Lus10029948.g ID=Lus10029948.BGIv1.0 annot-version=v1.0 ATGGAAAGTCCTCCAGTTAGGCCATTTGGTGGCAGCCACACTTTCAACCCACCACCACCAGAGAACAAGTTACATTCTCACCATCACCATGGCCTTTCAT CCAATTCTGTTCTGATAATTGCTGTCTCAGTAATCTCCATTGGGTTAGCCCTGGTTGTGTTCCTGGCTATTCTGCTTCTTAGGAGACTCAGAAGAGATTC TTCTGTCTCCAAATCCAGCAGCTTCAAGGAGACCAACAACAACATTGGACACCAACAACACATCACTGTTCTTCCCAATGGGTTGTGTAATAACAACAGC AGAGCAGTTTTCATCCCTCCTCATTCCACCCCTCTCCACCACTTCACTTCCAGCCCCGATGTGAGAGGAGGTGGGTGTCTGAGTTCAGGAAGCTTGGTCC AGAAGACAACTCCAGGGAGGATGGTTGTGAAGAGAGCAGCAGCAGTACAAGTGTTCACATACAGAGAACTAGAATTGGCCACAGAAAAGTTCAGTGAAGG AAATGTGATTGGGAATGGTGGGTATGGAGTGGTATACAAAGGTATACTCAGTGATGGTACCGTTGCTGCAATTAAGATGCTCCATCGAGAAGGGAAACAA GCTGAACGTGCCTTCAGGATAGAGGCAAGAAATAGTCATTCACCAATCATCCTAGGAATAAGACAAAAGGTGGATCTACTGAGTAGGCTTCATTCATCCT ACTTGGTTGAGTTAGTTGGCTACTGTGCTGATCAACAGCACAGGCTGCTGATCTTTGAGTTCATGCCCAACGGTACTCTCCAGCAGCACTTGCACCATCC CAAGCAATATCAGCCGTTGGATTGGGCGACACGGTTGAGGATCGCCCTCGATTGTGCTAGGGCGCTCGAGTTCCTCCACGAACATGCAGTCCCGGCGGTT ATCCACCGTGACTTCAAGTGCAGCAACATCTTGCTTGATCAGAACTTCAGGGCTAAGGTCTCCGATTTCGGGCTGGCCAAGACCGGTTCGGACAAGATCA ACGGCCTAGTTTCGACCCGGGTTTTGGGGACCACCGGTTACCTGGCACCAGAGTATGCTTCAACAGGCAAGCTCACTACAAAATCAGACGTGTACAGCTA TGGTGTGGTCCTTTTGCAACTCTTAACTGGCCGCATACCTGTTGACATCAAGAGGCCTCCGGGAGAACATGTTCTTGTCTCTTGGGCGCTTCCAAGACTA ACCAACAGAGAGAAGGTGGGGGAAATGGTTGATCCAGCATTGGAAGGACAGTATTCCAAGAAAGATTTGGTTCAGGTGGCTGCTATTGCAGCAATGTGTG TCCAACCAGAAGCAGATTACAGGCCACTAATGACAGATGTAGTGCAATCACTAATCCCACTGGTGAAGAACCTCTCTTCTTCTTCTTCCTCGTCTTCCGT ATCTTCATCAGCAAGATTCCAGAACCAGATAAGCCCCAGGGAAGGATCAATCCTGTGTAAGAAGAACGATATGAGCCATAGAGCACTGTTACTATGCTGA
AA sequence Show only first row Show all	>Lus10029948 pacid=23159781 polypeptide=Lus10029948 locus=Lus10029948.g ID=Lus10029948.BGIv1.0 annot-version=v1.0 MESPPVRPFGGSHTFNPPPPENKLHSHHHHGLSSNSVLIIAVSVISIGLALVVFLAILLLRRLRRDSSVSKSSSFKETNNNIGHQQHITVLPNGLCNNNS RAVFIPPHSTPLHHFTSSPDVRGGGCLSSGSLVQKTTPGRMVVKRAAAVQVFTYRELELATEKFSEGNVIGNGGYGVVYKGILSDGTVAAIKMLHREGKQ AERAFRIEARNSHSPIILGIRQKVDLLSRLHSSYLVELVGYCADQQHRLLIFEFMPNGTLQQHLHHPKQYQPLDWATRLRIALDCARALEFLHEHAVPAV IHRDFKCSNILLDQNFRAKVSDFGLAKTGSDKINGLVSTRVLGTTGYLAPEYASTGKLTTKSDVYSYGVVLLQLLTGRIPVDIKRPPGEHVLVSWALPRL TNREKVGEMVDPALEGQYSKKDLVQVAAIAAMCVQPEADYRPLMTDVVQSLIPLVKNLSSSSSSSSVSSSARFQNQISPREGSILCKKNDMSHRALLLC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G54820			Protein kinase superfamily pro...		Lus10029948 [exp]	0	1
AT1G54820			Protein kinase superfamily pro...		Lus10004461 [exp]	1.0	0.9613
AT5G12920			Transducin/WD40 repeat-like su...		Lus10031253 [exp]	2.0	0.9409
AT1G67260	TCP	TCP1	TCP family transcription facto...		Lus10034072 [exp]	2.0	0.9579
AT2G31580			tRNAHis guanylyltransferase (....		Lus10006155 [exp]	4.2	0.9431
AT5G15310	MYB	ATMYB16, ATMIXT...	myb domain protein 16 (.1.2)		Lus10015376 [exp]	5.7	0.9255
AT2G21280		GC1, ATSULA	GIANT CHLOROPLAST 1, NAD(P)-bi...		Lus10042051 [exp]	6.2	0.9125
AT3G18370		NTMCTYPE3, ATSY...	C2 domain-containing protein (...		Lus10009032 [exp]	6.8	0.8833
AT3G02110		SCPL25	serine carboxypeptidase-like 2...		Lus10015382 [exp]	7.9	0.9211
AT4G12910		SCPL20	serine carboxypeptidase-like 2...		Lus10009562 [exp]	8.8	0.9151
AT4G29990			Leucine-rich repeat transmembr...		Lus10025849 [exp]	9.5	0.9279

Compare expression of checked genes

Lus10029948 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.