Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05200 170 / 2e-50 ATL6 RING/U-box superfamily protein (.1) AT5G27420 151 / 2e-43 CNI1, ATL31 carbon/nitrogen insensitive 1 (.1) AT1G22500 117 / 1e-30 AtATL15 Arabidopsis thaliana Arabidopsis toxicos en levadura 15, RING/U-box superfamily protein (.1) AT1G72200 117 / 3e-30 RING/U-box superfamily protein (.1) AT4G09120 110 / 2e-28 RING/U-box superfamily protein (.1) AT2G35000 111 / 3e-28 ATL9 Arabidopsis toxicos en levadura 9, RING/U-box superfamily protein (.1) AT4G09130 110 / 3e-28 RING/U-box superfamily protein (.1) AT1G35330 107 / 5e-27 RING/U-box superfamily protein (.1) AT2G34990 95 / 1e-22 RING/U-box superfamily protein (.1) AT4G40070 92 / 1e-21 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004460 [exp] 480 / 7e-172 AT3G05200 307 / 6e-102 RING/U-box superfamily protein (.1) Lus10000333 [exp] 471 / 2e-168 AT3G05200 309 / 2e-102 RING/U-box superfamily protein (.1) Lus10031515 [exp] 278 / 2e-93 AT3G05200 232 / 1e-73 RING/U-box superfamily protein (.1) Lus10015167 [exp] 277 / 4e-93 AT3G05200 226 / 2e-71 RING/U-box superfamily protein (.1) Lus10029794 [exp] 118 / 2e-30 AT1G72200 219 / 1e-66 RING/U-box superfamily protein (.1) Lus10036466 [exp] 110 / 5e-28 AT1G72200 186 / 6e-55 RING/U-box superfamily protein (.1) Lus10041134 [exp] 109 / 1e-27 AT1G72200 182 / 3e-54 RING/U-box superfamily protein (.1) Lus10000487 [exp] 72 / 2e-14 AT4G17920 196 / 4e-61 RING/U-box superfamily protein (.1) Lus10004572 [exp] 68 / 5e-13 AT4G17920 209 / 3e-66 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G025800 [exp] 234 / 2e-75 AT3G05200 261 / 9e-84 RING/U-box superfamily protein (.1) Potri.005G036800 [exp] 211 / 3e-66 AT3G05200 261 / 7e-84 RING/U-box superfamily protein (.1) Potri.005G160900 [exp] 127 / 7e-34 AT1G22500 203 / 5e-61 Arabidopsis thaliana Arabidopsis toxicos en levadura 15, RING/U-box superfamily protein (.1) Potri.003G093500 [exp] 76 / 3e-16 AT4G17920 186 / 1e-57 RING/U-box superfamily protein (.1) Potri.001G140900 [exp] 76 / 9e-16 AT4G17920 183 / 3e-56 RING/U-box superfamily protein (.1) Potri.008G018900 [exp] 64 / 2e-12 AT2G35910 100 / 2e-26 RING/U-box superfamily protein (.1) Potri.017G049300 [exp] 66 / 3e-12 AT4G33565 166 / 6e-48 RING/U-box superfamily protein (.1) Potri.002G101800 [exp] 66 / 4e-12 AT1G72220 195 / 3e-58 RING/U-box superfamily protein (.1) Potri.010G206200 [exp] 62 / 1e-11 AT5G17600 91 / 6e-22 RING/U-box superfamily protein (.1) Potri.018G085001 [exp] 64 / 2e-11 AT4G28890 290 / 2e-94 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10029949 pacid=23159679 polypeptide=Lus10029949 locus=Lus10029949.g ID=Lus10029949.BGIv1.0 annot-version=v1.0 ATGCTGCGTTTGATTCCGAAGTGCGATCACGTTTTCCACCCCGAGTGTATTGATGCTTGGCTTGAATCTCACACCACTTGCCCCGTTTGTAGAGCTGATT TGACTCCTCAGCCGGACGATGCGATGGCAAGTCAACAACCCGAGTTGACGGCGGCGGGTTCGACTCGGGCCGAGTCGGATCTTGAAGCTGGACGAGTAAA TGACGCAGTTTCGGAACCGCAAATTGAAAGCGAGGACCGCGTGAATGCGGAGGTTCCGGAGGTGATGAGCGTTAACCAAGTCTTGAGTAGGAACCGGACA CGTGGATCCAGATCAGGGAGGCCACGTAAGTTTCCGAGATCCCACTCGACCGGCCACTCTTTGGTCCAACCGGGTGAGAATACCGACCGGTTCACTTTAA AGCTACCGGTCGATGTTCGGAAGCAATTGATGGACCAGGAGCTGAACCGGACTTCGAGCATGGTCGGGTTGCCGAGAGAAGGGAGTACTAGGCGTGGGTA TCGAACCGGTGAAGGTAGTAGTAGAGGCAAGCACTTGAGCTATAAGCGGTTGGATGATTCGTTGGAAAAGGGAGCCAAATCGGACCGGTGGGTGTTTAAC CGAACTCCGTCGTTCTTGGCTAGGGCATCGTCGTTCTTGACCAGAGCGTCTCCGTCTGTACGGTCCCCTAGGGTTGCGGCTGGGGAAGGGTCGTCGCTCC GATCACCACGACTAGTATCAAGGGAAGGGGAAGGTTCCTCGAGTAGTCCGGTTGGGCAAGATACGACCCAATCGGTCCGACCTCCGGTCTGA
AA sequence Show only first row Show all	>Lus10029949 pacid=23159679 polypeptide=Lus10029949 locus=Lus10029949.g ID=Lus10029949.BGIv1.0 annot-version=v1.0 MLRLIPKCDHVFHPECIDAWLESHTTCPVCRADLTPQPDDAMASQQPELTAAGSTRAESDLEAGRVNDAVSEPQIESEDRVNAEVPEVMSVNQVLSRNRT RGSRSGRPRKFPRSHSTGHSLVQPGENTDRFTLKLPVDVRKQLMDQELNRTSSMVGLPREGSTRRGYRTGEGSSRGKHLSYKRLDDSLEKGAKSDRWVFN RTPSFLARASSFLTRASPSVRSPRVAAGEGSSLRSPRLVSREGEGSSSSPVGQDTTQSVRPPV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05200		ATL6	RING/U-box superfamily protein...		Lus10029949 [exp]	0	1
AT3G09270		ATGSTU8	glutathione S-transferase TAU ...		Lus10001491 [exp]	1.7	0.9637
AT3G48990			AMP-dependent synthetase and l...		Lus10027477 [exp]	4.0	0.9332
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Lus10042857 [exp]	6.5	0.9282
AT4G33950		ATOST1, P44, SR...	SNF1-RELATED PROTEIN KINASE 2....		Lus10004382 [exp]	6.9	0.9310
AT2G45360			Protein of unknown function (D...		Lus10024565 [exp]	9.5	0.9164
AT5G08790	NAC	ATAF2, ANAC081	Arabidopsis NAC domain contain...		Lus10020883 [exp]	9.8	0.9386
AT2G26930		CMK, CMEK, ISPE...	PIGMENT DEFECTIVE 277, 4-\(cyt...		Lus10036098 [exp]	9.9	0.9400
AT1G65520		PEC11, ECHIC, A...	"delta\(3\), delta\(2\)-enoyl ...		Lus10005158 [exp]	10.5	0.9369
AT3G51520			diacylglycerol acyltransferase...		Lus10039135 [exp]	11.2	0.9393
AT3G23610		DSPTP1	dual specificity protein phosp...		Lus10036877 [exp]	11.7	0.9267

Compare expression of checked genes

Lus10029949 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.