Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72210 225 / 2e-71 bHLH bHLH096 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G22490 217 / 2e-68 bHLH bHLH094 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G01460 171 / 2e-50 bHLH bHLH057 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G65320 170 / 2e-50 bHLH bHLH099 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G46690 159 / 1e-45 bHLH bHLH071 beta HLH protein 71 (.1) AT2G46810 159 / 2e-45 bHLH bHLH070 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G24140 155 / 1e-43 bHLH bHLH097, FMA FAMA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G61950 146 / 4e-41 bHLH bHLH067 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT3G06120 111 / 5e-29 bHLH MUTE, bHLH045 MUTE, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G53210 96 / 4e-22 bHLH SPCH, bHLH098 SPEECHLESS, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000332 [exp] 524 / 0 AT1G22490 221 / 4e-70 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10015902 [exp] 224 / 3e-70 AT1G72210 235 / 7e-75 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10009475 [exp] 171 / 2e-50 AT1G72210 199 / 8e-62 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10001271 [exp] 166 / 2e-48 AT1G72210 194 / 1e-59 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10010101 [exp] 150 / 3e-44 AT2G46810 199 / 1e-63 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10016680 [exp] 154 / 1e-42 AT3G24140 358 / 2e-120 FAMA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10012603 [exp] 146 / 1e-42 AT2G46810 202 / 4e-65 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10007139 [exp] 148 / 1e-40 AT3G24140 308 / 2e-101 FAMA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10010503 [exp] 100 / 3e-24 AT3G06120 191 / 4e-61 MUTE, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G025900 [exp] 273 / 9e-90 AT1G72210 243 / 2e-78 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.005G039800 [exp] 267 / 1e-87 AT1G72210 231 / 5e-74 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G101900 [exp] 236 / 2e-75 AT1G72210 256 / 4e-84 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.007G097600 [exp] 222 / 4e-70 AT1G72210 167 / 2e-49 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.003G093200 [exp] 201 / 3e-62 AT5G46690 191 / 8e-59 beta HLH protein 71 (.1) Potri.005G071100 [exp] 191 / 2e-58 AT1G72210 177 / 1e-53 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G141100 [exp] 189 / 1e-57 AT5G46690 222 / 6e-71 beta HLH protein 71 (.1) Potri.002G180300 [exp] 171 / 8e-50 AT2G46810 228 / 2e-71 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.014G106300 [exp] 168 / 8e-49 AT2G46810 247 / 9e-79 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G314400 [exp] 161 / 8e-46 AT3G24140 399 / 2e-137 FAMA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10029950 pacid=23159852 polypeptide=Lus10029950 locus=Lus10029950.g ID=Lus10029950.BGIv1.0 annot-version=v1.0 ATGGCGATAGAAGCTCTGGATTTCGCATTCCAGCAACAAGACTACTCCTTCTTCACCCAGTTCACCAACAAAAACCAATCTGCAGACTCCTTCCTCTGGA CCGCCGCCGAATTCAACAACCACGACGGCGTCTGCGGCGACGAGGATTTCTTTCACCTCCCTGCCGCCGATGATTATAATAATGTCGGAGGTAATCAGTA CAATTGGGACAACTACTTCCTGCCCATTTCATCTTCTTCCACTTCCTCCCCGCCGGCGGGGTTAATCGACGGAATCTACACCGGCGGAAGCGATGTCACG ATCAATGGGGACTCATTATCCTCCTCTTCCCCTGCTCCACCTGCTGAGACGACGGAGACGAATGGCGGAGGCGGATCTCCTCTTCGACCGCCGAGAGTGA AGCGGCGGAGGGGGAGGAGCGGGAAGAATAAGGAGGAGATTGAGAGCCAGAGGATGACTCACATTGCCGTGGAGCGTAACCGGAGGAAGCAGATGAACGA GTACCTCTCTGTTCTCCGGTCGCTAATGCCTGGTTCCTATGCTCAAAGGGGCGACCAAGCGTCAATAATCGGCGGGGCGATAAATTTCGTGAAGGAGCTG GAACAGAAGCTACAACAATTTGAATCGTACGCCAAACGGAAATCGACAATCAATCAGAACGATCAGTCGCTGCCATTCTCCGAATTCTTCACCTTCCCGC AGTATAGCTCCTCTAATTCACAAAACTCTACGAACCTCGAGACCGAGAATCACGAGACAGGACCCCACCACGGAGTTGGTGACGTGGAGGTGACGATGGT GGAGAGCCACGCCAACGTGAGGATCCGGTGGAAGAAGCAGCCGAAGCAGCTACTGAGGTTGGTCGCTGGTCTACAGAGCTTGAGGCTTACAGTTCTTCAC CTCAATGTCACCACTGATCAAGATCAACAAATTGTGCTTTATTCTCTTAGCCTCAAGGTTGAAGATGATTGCAGGCTGAGTTCAGTTGATGAGATTGCCA CAGCTGTTTATGAGATGCTAGGTAGGATTAGCCAAGAAGCATAG
AA sequence Show only first row Show all	>Lus10029950 pacid=23159852 polypeptide=Lus10029950 locus=Lus10029950.g ID=Lus10029950.BGIv1.0 annot-version=v1.0 MAIEALDFAFQQQDYSFFTQFTNKNQSADSFLWTAAEFNNHDGVCGDEDFFHLPAADDYNNVGGNQYNWDNYFLPISSSSTSSPPAGLIDGIYTGGSDVT INGDSLSSSSPAPPAETTETNGGGGSPLRPPRVKRRRGRSGKNKEEIESQRMTHIAVERNRRKQMNEYLSVLRSLMPGSYAQRGDQASIIGGAINFVKEL EQKLQQFESYAKRKSTINQNDQSLPFSEFFTFPQYSSSNSQNSTNLETENHETGPHHGVGDVEVTMVESHANVRIRWKKQPKQLLRLVAGLQSLRLTVLH LNVTTDQDQQIVLYSLSLKVEDDCRLSSVDEIATAVYEMLGRISQEA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G72210	bHLH	bHLH096	basic helix-loop-helix (bHLH) ...		Lus10029950 [exp]	0	1
AT2G06925		ATSPLA2-ALPHA, ...	PHOSPHOLIPASE A2-ALPHA, Phosph...		Lus10011960 [exp]	1.4	0.8524
AT3G61490			Pectin lyase-like superfamily ...		Lus10007922 [exp]	2.0	0.8541
					Lus10031988 [exp]	3.5	0.7923
AT5G15780			Pollen Ole e 1 allergen and ex...		Lus10034365 [exp]	4.0	0.8098
AT5G09760			Plant invertase/pectin methyle...		Lus10013720 [exp]	6.0	0.8307
AT5G09760			Plant invertase/pectin methyle...		Lus10013721 [exp]	6.6	0.7940
AT1G22490	bHLH	bHLH094	basic helix-loop-helix (bHLH) ...		Lus10000332 [exp]	6.9	0.8495
AT2G26700		PID2	PINOID2, AGC (cAMP-dependent, ...		Lus10033029 [exp]	7.2	0.7860
					Lus10027544 [exp]	7.5	0.7751
AT1G65900			unknown protein		Lus10020799 [exp]	7.7	0.8454

Compare expression of checked genes

Lus10029950 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.