Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003941 [exp] 498 / 6e-177 ND 40 / 0.001 Lus10001533 [exp] 119 / 4e-30 ND 38 / 0.009 Lus10003943 [exp] 91 / 7e-20 AT3G59160 50 / 1e-06 F-box/RNI-like superfamily protein (.1) Lus10014200 [exp] 84 / 2e-17 ND / Lus10028664 [exp] 72 / 3e-13 AT5G50260 59 / 6e-09 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) Lus10042272 [exp] 64 / 6e-11 AT4G03220 65 / 4e-11 Protein with RNI-like/FBD-like domains (.1) Lus10017530 [exp] 59 / 3e-09 AT5G22660 55 / 8e-08 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1.2) Lus10029952 [exp] 58 / 3e-09 AT5G03100 68 / 1e-12 F-box/RNI-like superfamily protein (.1) Lus10037440 [exp] 57 / 2e-08 AT1G69630 84 / 5e-17 F-box/RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF07723 [flax] [poplar] LRR_2 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10029951 pacid=23159643 polypeptide=Lus10029951 locus=Lus10029951.g ID=Lus10029951.BGIv1.0 annot-version=v1.0 ATGAATGAACGATCAGAGATCCCCACAGTAGGCGAGCAAGAAGACATAATCTCATCGCTACCGGACGAAGTCATCTTCGAAATCCTCGATCACCTACAAT CCCTAGGTGAAGCTTCGAAATTCTGCACACAGTCAAATAGATGGTTCCGCCTATGGCAATCCTACCTCGCCCCGATTTTCCAGGAGTCCCGGTCGACCAA GGGATTAATCAACGACGACCAGGACAAGATCTTCCAGCTACAGAAAGGCAGCAACTACACCGGCAGCGATGAAACCGTCAGGATCGAAATCGGCTGGTGT CAACATAGGGGTCTTGCACGCATATTCCTCAACTATGTGTTCAGGGACTTGGCTGCGAATACTACGATGTCGTCGTCGTCGATTATTCCTCGAGAGATCG ACATCGCATGCGAAACCGAACAGCACCGCATTCCACGAGGGGTGTTGCTCTCTTCGCAATTTCGCGGCCTTCGAATCCTCAAGTTGCGGAATTTCGACTT TTCTGCCTATGCAAACGTTTTCACCCACGAAGAAGATAACCCCTTTGCGAATCTCGGAAGCTCCCTCAGGGAGCTATGCCTAGACCGGGTTAGCTTCCCC AATGAGCGAATTTTGAACGACATAATCAAAGCTGCCTCTCTATTGTATACATTGATCATCTCCTGGATCAATGATGAGATCAAGACACTTGAAATTCGAA ACCATCCGAACCTGAAAACCCTAGAAGTGGTGAATATTCCCAGCTTGACGGATTTCGATATTACAGGGGCTAACGGACTCGAAACCCTACAGCTTCAAGT CTTGAACGAGTGTGACACGATAAGAATTCCGTCCAGATGGAATCTCAAAGTACTACACATTGATGGAGTTGTGAAGTTGACTGAGAATGATCTTAACAAT TTGATCTCGAAGACATCATCTCTAGAGTGCCTCACATTGATCAATCCCGGTCAAGTACGGAGGCTGTGGATCTTCGGTAATCCTAAGCTTCAAGGGTTAA CACTGCACTACGAGTTTCAGCGCAGTACTCCTCCTATGGTGATCGAAATGGAGGCTCCCATGTTGACTGATTTCAAGTACATGGGAGACATAGATAGCTT TCCGGAATTGACATTGTTACAGGGGAGATCCAAGAAATCAGAAGCTGGCCGGCTGACAACATTCTACTGTTACATCACCGGCGGCAAGAACGTCGACAAG TTGAATCAGAGGATCATAGACAAGTACAATCCTAAAGAAGTCAAAGTAGTTGAAAGGCCATGA
AA sequence Show only first row Show all	>Lus10029951 pacid=23159643 polypeptide=Lus10029951 locus=Lus10029951.g ID=Lus10029951.BGIv1.0 annot-version=v1.0 MNERSEIPTVGEQEDIISSLPDEVIFEILDHLQSLGEASKFCTQSNRWFRLWQSYLAPIFQESRSTKGLINDDQDKIFQLQKGSNYTGSDETVRIEIGWC QHRGLARIFLNYVFRDLAANTTMSSSSIIPREIDIACETEQHRIPRGVLLSSQFRGLRILKLRNFDFSAYANVFTHEEDNPFANLGSSLRELCLDRVSFP NERILNDIIKAASLLYTLIISWINDEIKTLEIRNHPNLKTLEVVNIPSLTDFDITGANGLETLQLQVLNECDTIRIPSRWNLKVLHIDGVVKLTENDLNN LISKTSSLECLTLINPGQVRRLWIFGNPKLQGLTLHYEFQRSTPPMVIEMEAPMLTDFKYMGDIDSFPELTLLQGRSKKSEAGRLTTFYCYITGGKNVDK LNQRIIDKYNPKEVKVVERP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53840			F-box/RNI-like/FBD-like domain...		Lus10029951 [exp]	0	1
AT1G55790			Domain of unknown function (DU...		Lus10032898 [exp]	1.4	0.8751
					Lus10029758 [exp]	1.4	0.8803
AT5G46740		UBP21	ubiquitin-specific protease 21...		Lus10017529 [exp]	2.0	0.8172
AT3G06060		TSC10A	TSC10A, NAD(P)-binding Rossman...		Lus10039502 [exp]	8.5	0.8307
AT3G06060		TSC10A	TSC10A, NAD(P)-binding Rossman...		Lus10039501 [exp]	11.8	0.8162
AT5G16080		ATCXE17	carboxyesterase 17 (.1)		Lus10017587 [exp]	13.7	0.7435
AT4G11530		CRK34	cysteine-rich RLK (RECEPTOR-li...		Lus10022285 [exp]	14.1	0.7754
AT3G53180		NodGS	nodulin/glutamine synthase-lik...		Lus10023904 [exp]	15.2	0.7754
					Lus10010383 [exp]	16.2	0.7754
AT1G65390		ATPP2-A5	phloem protein 2 A5 (.1.2)		Lus10040606 [exp]	17.0	0.7465

Compare expression of checked genes

Lus10029951 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.