Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52670 68 / 1e-12 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1) AT5G03100 66 / 4e-12 F-box/RNI-like superfamily protein (.1) AT1G69630 62 / 9e-11 F-box/RNI-like superfamily protein (.1) AT5G53840 62 / 2e-10 F-box/RNI-like/FBD-like domains-containing protein (.1) AT3G58880 60 / 6e-10 F-box/RNI-like superfamily protein (.1) AT5G02920 59 / 9e-10 F-box/RNI-like superfamily protein (.1) AT3G52680 59 / 1e-09 F-box/RNI-like/FBD-like domains-containing protein (.1.2) AT4G03220 59 / 1e-09 Protein with RNI-like/FBD-like domains (.1) AT5G22700 59 / 2e-09 F-box/RNI-like/FBD-like domains-containing protein (.1) AT2G04230 58 / 2e-09 FBD, F-box and Leucine Rich Repeat domains containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029953 [exp] 350 / 3e-121 AT5G03100 66 / 3e-12 F-box/RNI-like superfamily protein (.1) Lus10037440 [exp] 290 / 2e-93 AT1G69630 84 / 5e-17 F-box/RNI-like superfamily protein (.1) Lus10018543 [exp] 183 / 6e-52 AT1G03510 534 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10039271 [exp] 138 / 3e-38 AT5G56820 88 / 5e-19 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10035326 [exp] 110 / 7e-29 AT5G27750 66 / 1e-12 F-box/FBD-like domains containing protein (.1) Lus10035308 [exp] 107 / 2e-27 AT5G22730 57 / 2e-09 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10027471 [exp] 108 / 7e-27 AT5G22730 55 / 2e-08 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10030031 [exp] 86 / 1e-20 AT2G04230 53 / 4e-09 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) Lus10029986 [exp] 91 / 7e-20 AT1G20920 347 / 2e-109 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G104300 [exp] 74 / 1e-14 AT3G26922 91 / 2e-20 F-box/RNI-like superfamily protein (.1) Potri.011G104100 [exp] 69 / 6e-13 AT3G26922 96 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.011G104200 [exp] 66 / 8e-12 AT3G26922 97 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.012G099400 [exp] 64 / 3e-11 AT5G44950 77 / 1e-14 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.001G395000 [exp] 59 / 2e-09 AT4G14103 89 / 4e-19 F-box/RNI-like superfamily protein (.1.2) Potri.011G121500 [exp] 56 / 2e-08 AT4G14103 142 / 6e-38 F-box/RNI-like superfamily protein (.1.2) Potri.008G050800 [exp] 56 / 2e-08 AT2G39490 264 / 1e-84 F-box family protein (.1) Potri.011G098700 [exp] 55 / 2e-08 AT1G80960 86 / 6e-18 F-box and Leucine Rich Repeat domains containing protein (.1.2.3) Potri.011G121400 [exp] 53 / 1e-07 AT1G16930 149 / 9e-40 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.017G146400 [exp] 53 / 1e-07 AT3G28410 79 / 2e-15 F-box/RNI-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029952 pacid=23159692 polypeptide=Lus10029952 locus=Lus10029952.g ID=Lus10029952.BGIv1.0 annot-version=v1.0 ATGGTGAAGAAATCAACGGCCGATCGAATTTCAGGATTACCAGACGAAATCCTACACTGCATCCTCAGTCGCATTAAGCCTCGAAGAAAAGCAGCCCAGA CCATCACTCTGTCTAGGCGATGGCGGAACCTTTGGCGACTGTACCCTTTCGTGCACTTCTCCAAGGAGGACGGATTATGGCTGGTCAATTTCCAGAAATT CGGCAAAGATACGATTGAAAGGTTTTCTCGATACAGCTTTTTGCGGATGGAAACTCTCAACATCTTTGTTTCGGATTACGAGTTATATCTCCCTGCTGAG TTCTCCCTCACTGTTTTCAATCAGCTTTTGGATCTAGCATCGGAGAGGAAAGCAGAAGAGGTCAACATCTCTGCCTGGCGTTGGAGCTTTCCCTTTCAAT TATTAATGTCCAATTCTGCCGCAAAGATTCTCAGAATCGAAGGTGTTATGTTTTCCTATAACGAGCATTGCGATGATCTTCCTCTTTCTCTGAATTCTTC CCTCAGAGTCCTGCATCTTAATCGTGTCTCTTTCGACGACGGCCGGCTTTTGGAAAACCTGGTAGCTAGCTCCCCACTCCTCGAAACCCTAGAAATAGAA GAAGTTTATGGTCTGAGTGAGCTCAAGGTTTCTACTCATAATACCAACCTGAAGACCCTTCGTATTGCTGGATGTTTTCAGGAGGAAATCGAGATTGCAG CTCCTGGACTACAAACTCTTCGTCCTGAAGATTTATATGATTTGTCAAAGTTTGAACTGATCGCTCCACAGCTGAATCTCTTGGAAATCACTCGTTCTCA CCTGACAGACCACTGTTTTGACCGTGTGATTTCGACGCTCAAATCTCTGAAATCGTTAACAATCAATGTCCATGATCCTGAGCTCAGGATGAAACTCAAG CTTTTGATTCCTAAGCTCGAGAGGGGTTGA
AA sequence Show only first row Show all	>Lus10029952 pacid=23159692 polypeptide=Lus10029952 locus=Lus10029952.g ID=Lus10029952.BGIv1.0 annot-version=v1.0 MVKKSTADRISGLPDEILHCILSRIKPRRKAAQTITLSRRWRNLWRLYPFVHFSKEDGLWLVNFQKFGKDTIERFSRYSFLRMETLNIFVSDYELYLPAE FSLTVFNQLLDLASERKAEEVNISAWRWSFPFQLLMSNSAAKILRIEGVMFSYNEHCDDLPLSLNSSLRVLHLNRVSFDDGRLLENLVASSPLLETLEIE EVYGLSELKVSTHNTNLKTLRIAGCFQEEIEIAAPGLQTLRPEDLYDLSKFELIAPQLNLLEITRSHLTDHCFDRVISTLKSLKSLTINVHDPELRMKLK LLIPKLERG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03100			F-box/RNI-like superfamily pro...		Lus10029952 [exp]	0	1
AT5G60440	MADS	AGL62	AGAMOUS-like 62 (.1)		Lus10020511 [exp]	1.0	0.9780
AT3G14620		CYP72A8	"cytochrome P450, family 72, s...		Lus10026179 [exp]	1.7	0.9128
					Lus10021381 [exp]	2.0	0.9574
AT3G13890	MYB	ATMYB26, MS35	MALE STERILE 35, myb domain pr...		Lus10015608 [exp]	2.8	0.9015
AT2G19070		SHT	spermidine hydroxycinnamoyl tr...		Lus10021393 [exp]	4.5	0.8608
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10021638 [exp]	7.7	0.7043
					Lus10000984 [exp]	9.5	0.8948
AT3G23350			ENTH/VHS family protein (.1)		Lus10021173 [exp]	10.4	0.8948
AT3G25610			ATPase E1-E2 type family prote...		Lus10017901 [exp]	10.8	0.6207
AT1G20330		FRL1, CVP1, SMT...	FRILL1, COTYLEDON VASCULAR PAT...		Lus10004158 [exp]	11.2	0.8948

Compare expression of checked genes

Lus10029952 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.