Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03100 46 / 2e-05 F-box/RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029952 [exp] 314 / 5e-107 AT5G03100 68 / 1e-12 F-box/RNI-like superfamily protein (.1) Lus10037440 [exp] 236 / 1e-72 AT1G69630 84 / 5e-17 F-box/RNI-like superfamily protein (.1) Lus10018543 [exp] 125 / 6e-32 AT1G03510 534 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10035308 [exp] 112 / 1e-29 AT5G22730 57 / 2e-09 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10039271 [exp] 98 / 4e-23 AT5G56820 88 / 5e-19 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10027471 [exp] 88 / 2e-19 AT5G22730 55 / 2e-08 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10030016 [exp] 88 / 6e-19 AT2G32970 799 / 0.0 unknown protein Lus10027507 [exp] 87 / 2e-18 AT1G01580 475 / 1e-152 FERRIC CHELATE REDUCTASE DEFECTIVE 1, ferric reduction oxidase 2 (.1) Lus10035326 [exp] 79 / 3e-17 AT5G27750 66 / 1e-12 F-box/FBD-like domains containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G395000 [exp] 42 / 0.0004 AT4G14103 89 / 4e-19 F-box/RNI-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF07723 [flax] [poplar] LRR_2 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10029953 pacid=23159836 polypeptide=Lus10029953 locus=Lus10029953.g ID=Lus10029953.BGIv1.0 annot-version=v1.0 ATGGAGAAGAAATCAATAGCGGATCAAATCTCAGATTTACCAGACGAAATCCTGCACTGCGTCCTCAGTCGCATTAAGCCTAAAAGGAAAGCAGCTCAGA CCATCACCCTGTCTAGGCGATGGCGGAGCCTCTGGCGATCGTACCCGGTTGTGCACTTCTCCGACGAAGACGCATTAGAGATGGTAAGTTTCCAGAGATT CGGCGATGATACGATGAAAAGGTTTTCTCGAGACAGCTCTTTCCGGATGGAAACTCTCGACATCCTTGTTCCGAACGATAAGCTCTGTTTCCCTGTTTTC AAGCAGCTTTTGGAGTTATCATCCGAGAGGAAAGCAGAGGAGGTCTACATCTCTGCCTGGGGTCTGAGCTTTCCCTTTCGATTATTGTCCAATTCTTTCA CAAAGATTCTAACAATCGAAGGTGTTCGGTTTTCCTATAACGATGATCTTCCTATTTCTCTGAATTCCCTCAGATTCCTGCATCTGAATGGTGTCCAATT CGATGACGACGGCCGGCTTTTTCGAAACCTGATAGCTAGCTCTCCAGTCCTGGAAACCCTGGAGATCGATTTAGTTCTTAACATGAGGGAGCTTAAGGTT TCTACTCATCATACCTGCCTGAAGACCCTTCGTATTGCTCGATGTTATTCGGTGGAAATCAAGATTGCAGCTCCTGGACTAGAGACTCTGCTCCTCGAAG AGTTGCATTTTCTGACAAAGTTTGAATTGACCGCTCCGCAGCTGAGTTTCTTGGAATTCACACATTACTCACATCGTAACCGAGGACAGAGACAGTGCTA TTTCGACATTGTGACTTCGGAGCTCCAATCTCTAGAATCCTTAATAATCTATGTCAATGATCCTGAGCTTGAGATGAAGCCGAAGCTTTCGAATCCCGAG CTCGAGTGGGGTTGA
AA sequence Show only first row Show all	>Lus10029953 pacid=23159836 polypeptide=Lus10029953 locus=Lus10029953.g ID=Lus10029953.BGIv1.0 annot-version=v1.0 MEKKSIADQISDLPDEILHCVLSRIKPKRKAAQTITLSRRWRSLWRSYPVVHFSDEDALEMVSFQRFGDDTMKRFSRDSSFRMETLDILVPNDKLCFPVF KQLLELSSERKAEEVYISAWGLSFPFRLLSNSFTKILTIEGVRFSYNDDLPISLNSLRFLHLNGVQFDDDGRLFRNLIASSPVLETLEIDLVLNMRELKV STHHTCLKTLRIARCYSVEIKIAAPGLETLLLEELHFLTKFELTAPQLSFLEFTHYSHRNRGQRQCYFDIVTSELQSLESLIIYVNDPELEMKPKLSNPE LEWG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03100			F-box/RNI-like superfamily pro...		Lus10029953 [exp]	0	1
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10039839 [exp]	1.0	1.0000
AT5G41040			HXXXD-type acyl-transferase fa...		Lus10026737 [exp]	3.9	0.7940
					Lus10026868 [exp]	4.5	0.9509
AT3G16180			Major facilitator superfamily ...		Lus10009506 [exp]	8.5	0.8160
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10003281 [exp]	9.8	0.8160
AT1G21880		LYM1	lysm domain GPI-anchored prote...		Lus10006200 [exp]	11.0	0.8160
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10023215 [exp]	12.0	0.8160
AT3G14040			Pectin lyase-like superfamily ...		Lus10023364 [exp]	13.0	0.8160
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10027028 [exp]	13.9	0.8160
					Lus10033149 [exp]	14.7	0.8160

Compare expression of checked genes

Lus10029953 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.