Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04980 155 / 6e-46 ATPDI10, ATPDIL2-2 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1) AT2G32920 149 / 7e-44 ATPDI9, ATPDIL2-3 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 9, PDI-like 2-3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035360 [exp] 205 / 4e-65 AT1G04980 543 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1) Lus10034528 [exp] 196 / 1e-64 AT1G04980 268 / 8e-89 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1) Lus10015160 [exp] 147 / 3e-43 AT1G04980 621 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1) Lus10031522 [exp] 147 / 4e-43 AT1G04980 651 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G160000 [exp] 162 / 1e-48 AT1G04980 617 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029954 pacid=23159698 polypeptide=Lus10029954 locus=Lus10029954.g ID=Lus10029954.BGIv1.0 annot-version=v1.0 ATGCTCCAGCTTCGATCGTCATCGCTGTCGTCGTCATTCCTAGCGCCGATCTTGTTCCTTTTCTTAACATCCAACCTCTGTCACGCGCTCTACACTGCTT CGACTCCGGTGGTTCAGCTCACTCCTTCCAACTTCAAGTCCAAGCAACCCAACCTCGAAAAGAGCGTTGGTGTCGGTGGGTACGGGTATCCGGCTCTTGT AGCATTGAACGTGAAGAAAGGAGTCTTCGCCCCGCTTAAAAGTGCCTATGAGCTCGAACACATCAGAGGGTTTGTGAAGGAAGCAGGGAGAGGTGGGAAG GGGAACCTGCCATTGGAAGGGACACTAGAGATAGTGAAGACAGAGCCATGGGACGGTAAAGATGGGCAGATCATGGAAGAAGACGAGTTCTCGCTCGAAG AGTTGATGGGCGACGAGGATCAGACCGCGGCCAAAGACGAATTGTAA
AA sequence Show only first row Show all	>Lus10029954 pacid=23159698 polypeptide=Lus10029954 locus=Lus10029954.g ID=Lus10029954.BGIv1.0 annot-version=v1.0 MLQLRSSSLSSSFLAPILFLFLTSNLCHALYTASTPVVQLTPSNFKSKQPNLEKSVGVGGYGYPALVALNVKKGVFAPLKSAYELEHIRGFVKEAGRGGK GNLPLEGTLEIVKTEPWDGKDGQIMEEDEFSLEELMGDEDQTAAKDEL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04980		ATPDI10, ATPDIL...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10029954 [exp]	0	1
AT5G03160		ATP58IPK	homolog of mamallian P58IPK (....		Lus10023181 [exp]	2.8	0.9119
AT2G28910		CXIP4	CAX interacting protein 4 (.1)		Lus10040809 [exp]	3.6	0.8912
AT1G77130		PGSIP2, GUX3	glucuronic acid substitution o...		Lus10028623 [exp]	4.2	0.9059
AT5G13890			Family of unknown function (DU...		Lus10012588 [exp]	4.8	0.9215
AT4G24330			Protein of unknown function (D...		Lus10015491 [exp]	5.5	0.9063
AT3G43520			Transmembrane proteins 14C (.1...		Lus10027640 [exp]	8.9	0.9067
AT5G52840			NADH-ubiquinone oxidoreductase...		Lus10039296 [exp]	11.2	0.8942
AT1G24510			TCP-1/cpn60 chaperonin family ...		Lus10006240 [exp]	11.8	0.8939
AT5G06660			Protein of unknown function DU...		Lus10029308 [exp]	12.4	0.9085
AT1G77670			Pyridoxal phosphate (PLP)-depe...		Lus10004089 [exp]	12.4	0.8904

Compare expression of checked genes

Lus10029954 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.