Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48560 950 / 0 TZP5, IMR1, ALS, AHAS, CSR1 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) AT5G17380 140 / 3e-35 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1) AT5G01330 67 / 3e-11 PDC3 pyruvate decarboxylase-3 (.1) AT5G01320 61 / 1e-09 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1) AT4G33070 60 / 5e-09 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1) AT5G54960 58 / 1e-08 PDC2 pyruvate decarboxylase-2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016751 [exp] 953 / 0 AT3G48560 1048 / 0.0 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Lus10035207 [exp] 848 / 0 AT3G48560 800 / 0.0 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Lus10022446 [exp] 613 / 0 AT3G48560 702 / 0.0 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Lus10032041 [exp] 582 / 0 AT3G48560 565 / 0.0 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Lus10022445 [exp] 309 / 4e-101 AT3G48560 325 / 7e-108 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Lus10032040 [exp] 283 / 2e-91 AT3G48560 266 / 2e-85 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Lus10035359 [exp] 259 / 1e-83 AT3G48560 219 / 3e-69 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Lus10028503 [exp] 133 / 2e-32 AT5G17380 916 / 0.0 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1) Lus10009141 [exp] 132 / 3e-32 AT5G17380 908 / 0.0 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G098300 [exp] 952 / 0 AT3G48560 1052 / 0.0 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Potri.015G097200 [exp] 947 / 0 AT3G48560 1058 / 0.0 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Potri.004G094600 [exp] 131 / 4e-32 AT5G17380 904 / 0.0 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1) Potri.016G120100 [exp] 56 / 8e-08 AT4G33070 1070 / 0.0 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1) Potri.010G135500 [exp] 55 / 2e-07 AT1G68890 1931 / 0.0 magnesium ion binding;thiamin pyrophosphate binding;hydro-lyases;catalytics;2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthases (.1) Potri.006G102500 [exp] 45 / 0.0001 AT5G01320 1023 / 0.0 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0254 [flax] [poplar] THDP-binding PF02775 [flax] [poplar] TPP_enzyme_C Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CL0254 [flax] [poplar] THDP-binding PF02776 [flax] [poplar] TPP_enzyme_N Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CL0085 [flax] [poplar] FAD_DHS PF00205 [flax] [poplar] TPP_enzyme_M Thiamine pyrophosphate enzyme, central domain
Representative CDS sequence Show only first row Show all	>Lus10029955 pacid=23159635 polypeptide=Lus10029955 locus=Lus10029955.g ID=Lus10029955.BGIv1.0 annot-version=v1.0 ATGGCGACGATCCCTTTCACCACTGCTCCGAATCTTTCCTTCCCCTGCAAACAAACCTCCTCCCTTCCTCCCCTCAACAACCTCCTCCTCCTCCGCCGCA GCCGTAACCTCCGCCTCTCCCCAGCCGCCATCTCCAATGATCACCACCACCACAACAACCCCCCAATTCCAACTTCTGCCACCACATCTATCGCCGCCAC CGCTCCCTCCATCCCCGTCGATAAATCCACCTACGTCTCCCGATTCCCCGCCGATCAACCAAGGAAGGGTGCAGACGTCCTCATCGAAGCCCTGGAACGT GAAGGCGTCAACCACGTCTTCGCCTACCCTGGCGGCGCTTCTTTAGAGATCCACCAGGCCCTGACTCGATCCAAAACCATCAGGAACGTCCTCCCGCGCC ATGAGCAAGGCGGCGTATTCGCCGCCGAGGGATACGCGCGCTCCTCTGGCCGCGTCGGCGTCTGCATCGCCACCTCTGGCCCCGGCGCCACCAACCTCGT CAGCGGCCTCGCTGACGCTATGCTAGACAGCGTCCCTCTCGTCGCGATCACTGGACAGGTCCCTCGCCGGATGATCGGCACCGACGCGTTTCAGGAGACA CCGATCGTCGAGGTGACGAAATCGATCACCAAGCACAATTACCTCGTCGGAGACGTCGATGACATCCCTAGAATTGTTAAAGAAGCGTTCTACATCGCTT CAACGGGAAGGCCCGGTCCGGTTCTGATTGATATCCCGAAGGACGTTCAGCAGCAGCTCGCGATTCCGAATTGGAATCGACAAGTCAGACTCCCTGGATA TTCCGCTCGGTTGCCTAAAACGCCGGATATCGGGCAGTTGAAGCAGATCCTGAGGCTGATCTCCGAATCAAAACGCCCGATCCTCTACGTAGGAGGTGGA TCGTTGAATTCCAGCGAAGAATTGAGAAAATTCGTGGAGATTACAAGGATTCCTGTAGCGAGTACGATCATGGGGTTAGGAAGTTTCCCCTGCGATCATG ATCTCTCCCTTCAGATGCTGGGAATGCACGGGACTATGTATGCCAATTATGGAATTGACAACGCCGATTTGCTTCTTGCATTTGGTGTTCGTTTCGACGA TCGTGTTACAGGAAAAATCGAGACGTTTGCTAGCCGAGCTAGGATCATTCACATCGATATCGATTCAGCCGAAATTGGTAAGAACAAGCAGCCTCATGTG TCAATGTGTGCCGATTTGAAGCTAGCACTGGAAGGGATGAACTGGTTGTTATTGGAAAACAATCAAAATCCGGAATTCGACTTCTCGGATTGGAGGAACG AGATTCAGGAACAGAAACTGAAGCATCCGTTGAGCTACAAGAGATTCGGAGAAGCAGTTCCTCCACAGTATGCAATCAAGCTGCTGGATGAACTAACTGA AGGAAATGCGATTATTACTACTGGAGTGGGACAGCATCAGATGTGGTCAGCTCAGTTCTACCACTATCGAAATCCGCGACAATGGCTAACATCAGCAGGG CTAGGAGCGATGGGGTTCGGCTTACCAGCCGCAATCGGGGCAGCAGTGGCGAACCCTGGCGCCGTAGTGGTGGACATCGACGGGGACGGTAGTTTCATGA TGAATGTCCAGGAGCTGGCGACGATTCGAGTCGAGAATTTGCCGGTGAAGATTATGATACTGAACAACCAGCATTTGGGGATGGTGGTCCAGTGGGAGGA CAGGTTTTACAAGGCGAACAGAGCGCATACGTTTCTGGGGAACCCGGCGGGGGAGGAAGGGGAGATTTTTCCGAACATGTTGAATTTCGCCGAGGCTTGT GGGATACCGGCGGCCAGGGTGAGTAAGATCGGCGAGGTTAGGGAGGGGATTCAGAGGATGTTGGAGACTCCGGGGCCGTATTTGTTGGATGTGATTGTGC CTCATCAGGAACATGTTCTGCCGATGATTCCGAGTGGTGGTGGGTTTAAGGACGCCATTACTGAAGGAGATGGCAGGAGTGAGTATTAG
AA sequence Show only first row Show all	>Lus10029955 pacid=23159635 polypeptide=Lus10029955 locus=Lus10029955.g ID=Lus10029955.BGIv1.0 annot-version=v1.0 MATIPFTTAPNLSFPCKQTSSLPPLNNLLLLRRSRNLRLSPAAISNDHHHHNNPPIPTSATTSIAATAPSIPVDKSTYVSRFPADQPRKGADVLIEALER EGVNHVFAYPGGASLEIHQALTRSKTIRNVLPRHEQGGVFAAEGYARSSGRVGVCIATSGPGATNLVSGLADAMLDSVPLVAITGQVPRRMIGTDAFQET PIVEVTKSITKHNYLVGDVDDIPRIVKEAFYIASTGRPGPVLIDIPKDVQQQLAIPNWNRQVRLPGYSARLPKTPDIGQLKQILRLISESKRPILYVGGG SLNSSEELRKFVEITRIPVASTIMGLGSFPCDHDLSLQMLGMHGTMYANYGIDNADLLLAFGVRFDDRVTGKIETFASRARIIHIDIDSAEIGKNKQPHV SMCADLKLALEGMNWLLLENNQNPEFDFSDWRNEIQEQKLKHPLSYKRFGEAVPPQYAIKLLDELTEGNAIITTGVGQHQMWSAQFYHYRNPRQWLTSAG LGAMGFGLPAAIGAAVANPGAVVVDIDGDGSFMMNVQELATIRVENLPVKIMILNNQHLGMVVQWEDRFYKANRAHTFLGNPAGEEGEIFPNMLNFAEAC GIPAARVSKIGEVREGIQRMLETPGPYLLDVIVPHQEHVLPMIPSGGGFKDAITEGDGRSEY

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48560		TZP5, IMR1, ALS...	TRIAZOLOPYRIMIDINE RESISTANT 5...		Lus10029955 [exp]	0	1
AT2G05830			NagB/RpiA/CoA transferase-like...		Lus10001970 [exp]	2.0	0.8629
AT5G58375			Methyltransferase-related prot...		Lus10042227 [exp]	2.0	0.8773
AT5G10530			Concanavalin A-like lectin pro...		Lus10029554 [exp]	3.5	0.8388
AT4G05320		UBQ10	polyubiquitin 10 (.1.2.3.4.5.6...		Lus10018367 [exp]	4.0	0.8452
AT3G04350			Plant protein of unknown funct...		Lus10000813 [exp]	4.2	0.8505
AT5G58620	C3HZnF		zinc finger (CCCH-type) family...		Lus10040662 [exp]	4.5	0.8406
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10022193 [exp]	4.6	0.8615
AT3G01170			Ribosomal protein L34e superfa...		Lus10005234 [exp]	5.9	0.8522
AT4G35220			Cyclase family protein (.1)		Lus10014092 [exp]	8.1	0.8405
AT1G16180			Serinc-domain containing serin...		Lus10008709 [exp]	9.4	0.8527

Compare expression of checked genes

Lus10029955 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.