Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32900 860 / 0 ATZW10 centromere/kinetochore protein, putative (ZW10) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035358 [exp] 1373 / 0 AT2G32900 842 / 0.0 centromere/kinetochore protein, putative (ZW10) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G223600 [exp] 996 / 0 AT2G32900 972 / 0.0 centromere/kinetochore protein, putative (ZW10) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0295 [flax] [poplar] Vps51 PF06248 [flax] [poplar] Zw10 Centromere/kinetochore Zw10
Representative CDS sequence Show only first row Show all	>Lus10029956 pacid=23159835 polypeptide=Lus10029956 locus=Lus10029956.g ID=Lus10029956.BGIv1.0 annot-version=v1.0 ATGGACGCTCTTTTCGACGCGATCAACGTCCGCGATCTCCTCCCCGCCGGCGACCTGACGGACCAAACATCCCCGCTCTCCGCGCCTGATCTTCGCCTCC TCATCACTCGTCTCGACTCTCACTCGCTCCAGATCAAATCCAAGGTCCAATCCTATCTCACCGCGCACCACGGCGATTTTTCGTCACTCTTCCAGCTCTG CAATGACGCCGTCTCCCGGACAGAAGAGATCAACCGGAAGGTATCTGATCTCTCCTCTATTTTATCCGACACTCCCGTGGACGTCGGAATTAGGGAGATC CTCGAGGAGTTGAACCGGAAGCTGAGCGAGGCGAAGGTGAAGAAAGAGTTGCTACAGTTGGTGAACGCGATTGTGGATATTAGCGAGAGGTTGAGTGCTG TGAGGGAAGTGGTGAAGAATGGGAAGTTGATCGTTGCTGCTGAGGAATTGAAGGAGCTGAAGGTTGTGTTGAGGATTGGCGATGAGGAGGATGGGGATCC TTTGGTGTATGGATTGCTGAGGAAGGAATGGCTGGGCTGCTTCGATGAGATTCAAGATATGCTTGTGAAATTCATGGAGAAAGCAGTGCAGCTGGAGCCG GAATCAAGTACTGTTCGAGTTCGTCATCAGTTGAGTGTTGATGAACTTGAAAGAGTGGAACTCAAAGCTGTGTTGCAAGCAATGGAAGTGGTTGGGATAT TAGATTACGGGCTTGCAAAGGTAGCTGACAAGATAGTCAAGTTTGTCATCGCACCTGCCATGAACTGTAGCACAACTACTTCCTTCGCTGAAGAGGTTAA CGAAATATCTGAAGGTTTGACAGAAGCAATATTGAAAACTGTACCATCATCTGATTTTAAGACTGAAGATGTGGATGGCCAGAGAATTTATTCCAGCGTT CTTCAGGTTGTGAAGTTTATATCAAAATGCATATGCCTTGAAAAGGAATCATGGGTCCGGTGTTTTGGAAGATTGGCTTGGCCTAGGATATCTGAGCTGA TTGTTTCTAATTTCCTCTCGAAGGTTGTTCCCAAGGATGCTGCAAACCTGGCCAGCTTTCAGATGATCATAAAAAACACGTCAGAGTTTGAAGACGCTTT AAAAGACTTGATGTTCATATCAGCTTCTCATAAGCCAGATCTAAAGTTGAGCAACTTTGCTGAAAATGTTGAAGTTCATTTTGCTTCTCGGAAAAAGATT GAAATATTGGCTAAGGCCAGAAATTTCCTCTTACACTGTGACTTCTCTATTCCACAAGAGTATCTGAGAAAGAGTTCTCAATCAAAGAACAGAGCAGGAA TCGATGCAGGCTCTACAGAGCTGCTTGTTCATTTGCTATTCATGTCTGAGAGTTGTGTGGTCTCAACAGCAGCTTCACAGCTGATGGCTCTAGTTCATCA GACACTCAAGGATGTTTGCTTATCATCTCCGAAAGTTGCACCTGAATTCTATCGTGCTGCTAGGGACGCAATACTTCTGTATGAAGCAATCATTCCTGTC AAGCTAGAAAGGAAGCTTGATAACTTTGACCAAGCCGCTGTTCTAATGCACAACGACTGCATTTATTTATCTCAAGAGATACTTGGATTGGCATTTCAGG TATTCATGGTTTCGGTTAATAGCTTTTCTCCTCTTAAAGCCGATTCACACTTTTCTCCTGCTCACCAGTTTCCTGTGTTGGCACAGTATCGACCAGACTT TCCAATGTCCATCAAAGAACATGCTGTTTTCGTGGACATGGCTCCAAGGTTCCAAGTAATGGCTGACAAGATACTGCAACGACAAATCCAGCTCGTCATT CGTAATCTGAAAGAGGCTATTGATGGCGCTAGTGGTTTCCAAAACTCTCATCTGATGCAACAGTTTGAATCTGCAAAGTTTAGCATAGATCAGGTGGTAT TTGTCCTCGAAAAAGTGCGGATTATATGGGAACCTCTATTATTACCTTCTACTTATAAGAAGAGCATGTGTGCGGTTCTGGAGTCTGTTCTTTCCAGAAT CACAGTGGAGATTCTCCTTCTCGACGATATGGCTGCAGAGGAAACATTGCAGCTTCAAAGACTAATCCAGTTGATGCTGGAAGGTGTATCTCCTTTGTTG GATTCCTTTCTTTCTGCCAAGGAGAAGCCTGAACAGAAATCTTCCAGACGAATCAACGATCTCATACCTTCTTTACGCAAGATTCGCAAGCTTGCAGGCA AAACTACTAGACATGCCATTGAAATCCATTACCACAGATTGGGAAACCGGCGAGCTTCATCGGTGCAGTTTCAGCCAGTCAGAGGTACTTGTATAACCAT TTTCGGCACGGTGGTGGATCTCATTAGAGCCATATTCACCGATACACCTCTGCGGAAAGAATGCATATGGAGGATCGAGAATGTAGACTTGTGA
AA sequence Show only first row Show all	>Lus10029956 pacid=23159835 polypeptide=Lus10029956 locus=Lus10029956.g ID=Lus10029956.BGIv1.0 annot-version=v1.0 MDALFDAINVRDLLPAGDLTDQTSPLSAPDLRLLITRLDSHSLQIKSKVQSYLTAHHGDFSSLFQLCNDAVSRTEEINRKVSDLSSILSDTPVDVGIREI LEELNRKLSEAKVKKELLQLVNAIVDISERLSAVREVVKNGKLIVAAEELKELKVVLRIGDEEDGDPLVYGLLRKEWLGCFDEIQDMLVKFMEKAVQLEP ESSTVRVRHQLSVDELERVELKAVLQAMEVVGILDYGLAKVADKIVKFVIAPAMNCSTTTSFAEEVNEISEGLTEAILKTVPSSDFKTEDVDGQRIYSSV LQVVKFISKCICLEKESWVRCFGRLAWPRISELIVSNFLSKVVPKDAANLASFQMIIKNTSEFEDALKDLMFISASHKPDLKLSNFAENVEVHFASRKKI EILAKARNFLLHCDFSIPQEYLRKSSQSKNRAGIDAGSTELLVHLLFMSESCVVSTAASQLMALVHQTLKDVCLSSPKVAPEFYRAARDAILLYEAIIPV KLERKLDNFDQAAVLMHNDCIYLSQEILGLAFQVFMVSVNSFSPLKADSHFSPAHQFPVLAQYRPDFPMSIKEHAVFVDMAPRFQVMADKILQRQIQLVI RNLKEAIDGASGFQNSHLMQQFESAKFSIDQVVFVLEKVRIIWEPLLLPSTYKKSMCAVLESVLSRITVEILLLDDMAAEETLQLQRLIQLMLEGVSPLL DSFLSAKEKPEQKSSRRINDLIPSLRKIRKLAGKTTRHAIEIHYHRLGNRRASSVQFQPVRGTCITIFGTVVDLIRAIFTDTPLRKECIWRIENVDL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G32900		ATZW10	centromere/kinetochore protein...		Lus10029956 [exp]	0	1
AT2G38430			unknown protein		Lus10003276 [exp]	3.2	0.8143
AT5G16690		ORC3, ATORC3	origin recognition complex sub...		Lus10034596 [exp]	8.2	0.7801
AT2G05250			DNAJ heat shock N-terminal dom...		Lus10001171 [exp]	10.5	0.7607
AT5G39360		EDL2	EID1-like 2 (.1)		Lus10042699 [exp]	13.8	0.7318
AT5G41120			Esterase/lipase/thioesterase f...		Lus10012560 [exp]	14.8	0.7663
AT5G32440			Ubiquitin system component Cue...		Lus10027699 [exp]	15.3	0.7017
AT2G01910		ATMAP65-6	Microtubule associated protein...		Lus10031939 [exp]	15.9	0.7627
AT1G70870			Polyketide cyclase/dehydrase a...		Lus10039893 [exp]	19.6	0.7240
AT2G40860			protein kinase family protein ...		Lus10024475 [exp]	20.2	0.7102
AT1G79870			D-isomer specific 2-hydroxyaci...		Lus10025795 [exp]	22.0	0.7574

Compare expression of checked genes

Lus10029956 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.