Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G62422 67 / 2e-13 unknown protein AT1G12020 65 / 9e-13 unknown protein AT5G13090 60 / 8e-11 unknown protein AT1G24270 52 / 3e-08 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031521 [exp] 99 / 9e-26 AT1G62422 125 / 4e-36 unknown protein Lus10015161 [exp] 83 / 7e-20 AT1G62422 97 / 8e-26 unknown protein Lus10003131 [exp] 51 / 1e-07 AT1G24270 87 / 2e-20 unknown protein Lus10011343 [exp] 50 / 4e-07 AT5G13090 149 / 2e-43 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G022900 [exp] 77 / 3e-17 AT1G12020 115 / 2e-31 unknown protein Potri.004G001800 [exp] 70 / 2e-14 AT1G12020 135 / 3e-39 unknown protein Potri.015G099400 [exp] 65 / 3e-12 AT3G08900 114 / 5e-29 reversibly glycosylated polypeptide 3 (.1) Potri.012G101200 [exp] 63 / 8e-12 AT5G13090 93 / 2e-22 unknown protein Potri.001G059400 [exp] 56 / 3e-09 AT5G13090 119 / 8e-32 unknown protein Potri.003G168500 [exp] 54 / 2e-08 AT5G13090 100 / 1e-24 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029957 pacid=23159881 polypeptide=Lus10029957 locus=Lus10029957.g ID=Lus10029957.BGIv1.0 annot-version=v1.0 ATGAAGAATCCTTACAAGAAGGGTAAAGTCCACCCCTCCCCATCCCAACCACCGCCGCCGGTGTCTTCGCCGTCCGCCGCCTTCCTGTCCCTCCTCCCAG CGGCGATCCTCTCCCTCACCGCCGCCTTATCCCCTCAGGACAAGGAAGTACTCGCCTACCTCATCTCATCCTGCCACGTCAACAACTCTTCCTCTTCCTC TTCCTCCTCCGCCAGTCAACGGAAGGCAGCTAAGACCACGGACACCGCCGCTGCCGGTCAACGGAAGGCATCTCGCAACAAGGTCGCTGCCAAAGACCAC GGCCCGGCGTTCGAGTGCAGCTGCTTCAGGTGCTACACGACTTTCTGGGCGAGGTGGGACGCTTCGCCCAACCGCCACGTCATCCACGACATTATAGAGG CCTACGAGGAGTCGCTGTCGACGTCCTCTGCGGCGACGAGTCGTCAGAAGAAGAGTAAGAAGCGGTCGGCGACGTCGTCGAGGAGGAAAGAGGGCGAGTT AGCGGTGGAATCTTCGGCGATAGAGCAGCCGGTTACCGACGATGCGAGCTGCGGCGGCGGCGGGGAAGGGGTGATGGAGGATGATGTGGAGAAGAGTGCG GTGAGGAAGATTGTGAGCTTTGTTGGGGATAGAATTATTGGGATTTTTGGGGTTTAA
AA sequence Show only first row Show all	>Lus10029957 pacid=23159881 polypeptide=Lus10029957 locus=Lus10029957.g ID=Lus10029957.BGIv1.0 annot-version=v1.0 MKNPYKKGKVHPSPSQPPPPVSSPSAAFLSLLPAAILSLTAALSPQDKEVLAYLISSCHVNNSSSSSSSSASQRKAAKTTDTAAAGQRKASRNKVAAKDH GPAFECSCFRCYTTFWARWDASPNRHVIHDIIEAYEESLSTSSAATSRQKKSKKRSATSSRRKEGELAVESSAIEQPVTDDASCGGGGEGVMEDDVEKSA VRKIVSFVGDRIIGIFGV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G62422			unknown protein		Lus10029957 [exp]	0	1
AT1G47240		ATNRAMP2, NRAMP...	NRAMP metal ion transporter 2 ...		Lus10010395 [exp]	6.0	0.8241
AT1G07530	GRAS	SCL14, ATGRAS2	GRAS \(GAI, RGA, SCR\) 2, ARAB...		Lus10004968 [exp]	7.4	0.8139
AT1G49050			Eukaryotic aspartyl protease f...		Lus10042982 [exp]	11.8	0.8313
AT2G23320	WRKY	WRKY15	WRKY DNA-binding protein 15 (....		Lus10006261 [exp]	25.4	0.8062
AT1G14130			2-oxoglutarate (2OG) and Fe(II...		Lus10031054 [exp]	34.1	0.8137
AT3G05010			Protein of unknown function, t...		Lus10018985 [exp]	41.6	0.8134
AT5G04410	NAC	NAC2, ANAC078	Arabidopsis NAC domain contain...		Lus10032724 [exp]	51.2	0.8093
AT1G65320			Cystathionine beta-synthase (C...		Lus10011457 [exp]	51.6	0.8025
AT4G27250			NAD(P)-binding Rossmann-fold s...		Lus10016968 [exp]	66.5	0.7655
AT5G50530			CBS / octicosapeptide/Phox/Bem...		Lus10032625 [exp]	73.8	0.7935

Compare expression of checked genes

Lus10029957 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.