Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42990 448 / 1e-158 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G04570 441 / 7e-156 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT4G26790 420 / 1e-147 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G06990 289 / 9e-96 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G14820 282 / 3e-93 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G75900 281 / 9e-93 EXL3 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G45960 279 / 1e-91 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G75880 278 / 3e-91 EXL1 SGNH hydrolase-type esterase superfamily protein (.1.2) AT2G31540 275 / 3e-90 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G42170 275 / 3e-90 SGNH hydrolase-type esterase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015162 [exp] 430 / 2e-151 AT2G04570 482 / 5e-172 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10031520 [exp] 432 / 4e-151 AT2G04570 473 / 3e-167 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10034540 [exp] 301 / 9e-101 AT1G75900 456 / 2e-161 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10003717 [exp] 298 / 3e-99 AT1G75900 458 / 3e-162 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10003719 [exp] 295 / 4e-98 AT1G75880 379 / 8e-131 SGNH hydrolase-type esterase superfamily protein (.1.2) Lus10017279 [exp] 294 / 8e-98 AT3G14820 370 / 1e-127 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10034541 [exp] 290 / 5e-96 AT1G75880 379 / 7e-131 SGNH hydrolase-type esterase superfamily protein (.1.2) Lus10013956 [exp] 289 / 1e-95 AT5G45950 432 / 6e-152 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10013572 [exp] 288 / 2e-95 AT1G75900 435 / 2e-153 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G219700 [exp] 542 / 0 AT2G42990 439 / 1e-154 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.014G160200 [exp] 540 / 0 AT2G42990 437 / 3e-154 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G205100 [exp] 467 / 1e-165 AT2G42990 492 / 2e-175 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.014G160100 [exp] 439 / 4e-155 AT2G04570 497 / 5e-178 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G242800 [exp] 301 / 2e-100 AT1G75900 419 / 6e-147 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.013G153000 [exp] 295 / 2e-98 AT2G30220 355 / 1e-121 GDSL-like Lipase/Acylhydrolase family protein (.1) Potri.002G018800 [exp] 293 / 7e-97 AT1G75900 415 / 2e-144 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.006G118300 [exp] 287 / 3e-95 AT5G03820 478 / 2e-170 GDSL-like Lipase/Acylhydrolase family protein (.1) Potri.011G062000 [exp] 287 / 5e-95 AT5G45960 440 / 8e-155 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.008G076600 [exp] 285 / 2e-94 AT1G06990 353 / 4e-121 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10029958 pacid=23159789 polypeptide=Lus10029958 locus=Lus10029958.g ID=Lus10029958.BGIv1.0 annot-version=v1.0 ATGGCACCACCCACAATTAATCCTCTGTTCCTCTGTTTCTTACTACTGGCAGCACATTCAACGAGGGGCGAAGTGCCGGCGGTCATAGTGTTCGGAGACT CCTCCGTCGACGCCGGCAACAACAACGTCATCTCCACCGTCTTGAAGAGCAACTTCCAGCCTTACGGTCGGGACTTCGACGGCGGCAGGCCCACGGGGAG ATTCTCCAACGGTCGTATCCCGCCTGACTACATCTCTCAGGCGTTCGGGCTCAAGTCCAACATCCCTGCTTACTTGGATCCAAACTATAGCATCGCTGAC TTCGCCACCGGGGTCTGCTTCGCCTCCGCCGGCACCGGCTACGATAACGCCACCTCCAATGTCCTGAATGTGATTCCACTATGGAAGGAGTTGGAGTACT TCACGGACTACCAATCAAAGCTAAGAGCCTACGTAGGCGACCAAAAGGGTAACAAAATCATCTCCGAGGCATTGTACCTAATGAGTTTAGGCACGAACGA CTTCCTCGAAAACTACTACACATTTCCGACAAGGAGGTCACAGTTCAACGTGAAACAATACCAGGACTTCCTGGTCCAGCTCTCCAAAGGGTTCGTGACC GAGCTCTACAGCCTCGGAGCGAGGAAGATCTCTCTCACGGGAGTCCCCCCGATGGGGTGCCTGCCTTTGGAGAGGGCCACGAACTTTGCACACGGCCACG ACTGTAACCACGAGTACAACGACGTTTCCCTCGAGTTCAACGGGAAGCTCGATGCCATGGCTAGCCAGCTCAACAGCGAGCTTCCCGGGTTGAAGATCGT GTTTACTAAAGATGTTTATGGACTTGTTCTTGACATGGTTAGAAACCCTTCTTCTTATGGATTCGAGGTGGCGGGAGTGGCGTGCTGCGCGACGGGGATG TTCGAGATGGGATACCTCTGCAATAGGCATTCAGTTACTTGCTCCGATGCCAATAAGTATGTATTCTGGGATGCTTTCCACCCCAGTGAGAAAACTAATC AAATTGTTTCTTCCCATCTCATCCCCATGCTTCTTGATAAGTTCAAATAA
AA sequence Show only first row Show all	>Lus10029958 pacid=23159789 polypeptide=Lus10029958 locus=Lus10029958.g ID=Lus10029958.BGIv1.0 annot-version=v1.0 MAPPTINPLFLCFLLLAAHSTRGEVPAVIVFGDSSVDAGNNNVISTVLKSNFQPYGRDFDGGRPTGRFSNGRIPPDYISQAFGLKSNIPAYLDPNYSIAD FATGVCFASAGTGYDNATSNVLNVIPLWKELEYFTDYQSKLRAYVGDQKGNKIISEALYLMSLGTNDFLENYYTFPTRRSQFNVKQYQDFLVQLSKGFVT ELYSLGARKISLTGVPPMGCLPLERATNFAHGHDCNHEYNDVSLEFNGKLDAMASQLNSELPGLKIVFTKDVYGLVLDMVRNPSSYGFEVAGVACCATGM FEMGYLCNRHSVTCSDANKYVFWDAFHPSEKTNQIVSSHLIPMLLDKFK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G42990			GDSL-like Lipase/Acylhydrolase...		Lus10029958 [exp]	0	1
AT4G23840			Leucine-rich repeat (LRR) fami...		Lus10003886 [exp]	1.0	0.9093
AT5G04930		ALA1	aminophospholipid ATPase 1 (.1...		Lus10008947 [exp]	1.4	0.8982
AT1G05460		SDE3	SILENCING DEFECTIVE, P-loop co...		Lus10017379 [exp]	3.9	0.8196
AT1G78950		ATLUP3	Terpenoid cyclases family prot...		Lus10016438 [exp]	3.9	0.8544
AT5G10140	MADS	FLF, AGL25, FLC	FLOWERING LOCUS F, FLOWERING L...		Lus10003123 [exp]	4.0	0.8338
AT3G03320			RNA-binding ASCH domain protei...		Lus10012450 [exp]	4.8	0.7982
AT1G43850		SEU	SEUSS transcriptional co-regul...		Lus10028635 [exp]	4.9	0.8593
AT4G32050			neurochondrin family protein (...		Lus10001536 [exp]	5.2	0.8602
AT4G02900			ERD (early-responsive to dehyd...		Lus10000660 [exp]	5.3	0.8396
AT5G18070		DRT101	DNA-DAMAGE-REPAIR/TOLERATION 1...		Lus10007548 [exp]	8.0	0.8180

Compare expression of checked genes

Lus10029958 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.