Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G04560 535 / 0 AtLpxB lipid X B, transferases, transferring glycosyl groups (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035357 [exp] 711 / 0 AT2G04560 480 / 4e-168 lipid X B, transferases, transferring glycosyl groups (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G160300 [exp] 599 / 0 AT2G04560 556 / 0.0 lipid X B, transferases, transferring glycosyl groups (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF02684 [flax] [poplar] LpxB Lipid-A-disaccharide synthetase
Representative CDS sequence Show only first row Show all	>Lus10029959 pacid=23159727 polypeptide=Lus10029959 locus=Lus10029959.g ID=Lus10029959.BGIv1.0 annot-version=v1.0 ATGCTATTGAAAGCCTTCCGCACAGCGAAGAACCATCCCATTTCCGTATGTCTCTCATGGCTCCACATAAGAAGGCATTTCTCAGTTTCCAGCTCCGCCG CCAAAGATGGAGAGCTGAGAGTTTTCCTCGTCGCCGGCGAGGTTTCAGGCGACGCCATCGGTTCTCGCCTCATGGATTCCTTGAAGAAGCTCTCCCCTTT TCCCGTCCGCTTCTCCGGCGTTGGCGGGTCAATGATGTGCAAAGAAGGTATGGAATCTTTATTCCCAATTGAAGATATCTCAGTGATGGGTCTATGGGAG TTGCTACCTCATCTGAACAAGTTCAGGGTCAGATTGAGAGAAACGGTAGATGCAGCTGTTCTGTTTCGGCCGCATTGTATAGTGACAGTTGATTCCAAGG GGTTCTCTTTCCGTTTCCTGAAGCAGCTGAGAGCTAGAAATATCGGCGAAGGATCGTCTAAGAGTCCAGTACACTTCCATTATGTTGCCCCGTCGTTCTG GGCTTGGAAAGGGGGCGAAGCGAGGCTGAAGGGACTAACCAAGTTTGTGGATCATGTGTTCTGCATACTTCCAAATGAAGCGGCAGTTTGTCAGCTCAAT GGACTTGCTGCAACTTTCGTTGGACACCCGGTTCTGGAAGATCTGTTAGAGTTGAACTCGGGAAAGCAAGAATGGAGGATACAGGGCAATCCTGACAATT TTCGGAGTAGATTTGGCATATCTAAAGATGCCAAAGTCATTTCATTGCTTCCTGGAAGCCGATTACAAGAGGTTACTCGGATGCTTCCTATCTTCACAGA GGCCATTGATGAGCTCCAACACTCCTTTTCCAATTTAGTCACAGTAATTCACGTCGCACCTAATCAGGACGTGGAAGATTTCCTCGGTGGAGCTGTCAGC AAATGGCCAGCACCTGCTGTTTTGGTTCCAGGAGGAGACTCCATTCTCAAATATGATGCATTTAGCGCAAGCAAAGTTGCGCTCTGTACTTCTGGAACAG TTGCTGTGGAATTGCAGCTCGCGCGGCTGCCTTGTGCAGTAGCTTATCGAGCTAATATCCTGACTGAATGGTTCGTTCGGTACAAGGCAAAGATACAGTA CATCTCACTTCCCAATATTCTCATGGATTCTCCTGTCGTCCCTGAATCGCTGTTTCGATCATGCACACCGACCAATCTCGCTGCAATACTCGCGGAACTC CTGCGGAACGAGAAAGGCGAGCAGGAGGAACAGATTGCAGCTGCCGAGAAGGTGATCAGGCTCCTATTTCCTCCAGTAGGGATTCTCGAAACCTCGGATG TAGCAGAACGGAATGTCCCGCATTGTTCTCCGAGCATGATCGCTGCTTCCACCATTTTAAGCCATGTCAACTGA
AA sequence Show only first row Show all	>Lus10029959 pacid=23159727 polypeptide=Lus10029959 locus=Lus10029959.g ID=Lus10029959.BGIv1.0 annot-version=v1.0 MLLKAFRTAKNHPISVCLSWLHIRRHFSVSSSAAKDGELRVFLVAGEVSGDAIGSRLMDSLKKLSPFPVRFSGVGGSMMCKEGMESLFPIEDISVMGLWE LLPHLNKFRVRLRETVDAAVLFRPHCIVTVDSKGFSFRFLKQLRARNIGEGSSKSPVHFHYVAPSFWAWKGGEARLKGLTKFVDHVFCILPNEAAVCQLN GLAATFVGHPVLEDLLELNSGKQEWRIQGNPDNFRSRFGISKDAKVISLLPGSRLQEVTRMLPIFTEAIDELQHSFSNLVTVIHVAPNQDVEDFLGGAVS KWPAPAVLVPGGDSILKYDAFSASKVALCTSGTVAVELQLARLPCAVAYRANILTEWFVRYKAKIQYISLPNILMDSPVVPESLFRSCTPTNLAAILAEL LRNEKGEQEEQIAAAEKVIRLLFPPVGILETSDVAERNVPHCSPSMIAASTILSHVN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G04560		AtLpxB	lipid X B, transferases, trans...		Lus10029959 [exp]	0	1
AT1G09010			glycoside hydrolase family 2 p...		Lus10000159 [exp]	3.0	0.8381
AT3G07740		HXA2, HXA02, HA...	homolog of yeast ADA2 2A (.1.2...		Lus10000540 [exp]	5.7	0.8199
AT3G55460		SCL30, At-SCL30	SC35-like splicing factor 30 (...		Lus10002699 [exp]	6.3	0.8148
AT1G56310			Polynucleotidyl transferase, r...		Lus10031403 [exp]	8.9	0.7742
AT5G11200			DEAD/DEAH box RNA helicase fam...		Lus10002905 [exp]	9.5	0.8154
AT1G16570			UDP-Glycosyltransferase superf...		Lus10026065 [exp]	11.3	0.7866
AT4G36740	HD	HB-5, ATHB40	homeobox protein 40 (.1)		Lus10024031 [exp]	12.2	0.7591
AT3G61620		RRP41	3'-5'-exoribonuclease family p...		Lus10000255 [exp]	12.2	0.8009
AT1G78915			Tetratricopeptide repeat (TPR)...		Lus10034802 [exp]	13.5	0.7903
AT5G02610			Ribosomal L29 family protein ...		Lus10019180 [exp]	13.7	0.7809

Compare expression of checked genes

Lus10029959 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.