Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54730 431 / 4e-147 Major facilitator superfamily protein (.1.2.3) AT1G08920 404 / 1e-136 ESL1 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) AT2G48020 392 / 3e-132 Major facilitator superfamily protein (.1.2) AT1G08930 389 / 2e-130 ERD6 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) AT5G27350 387 / 4e-130 SFP1 Major facilitator superfamily protein (.1) AT5G27360 384 / 7e-129 SFP2 Major facilitator superfamily protein (.1) AT5G18840 384 / 2e-128 Major facilitator superfamily protein (.1) AT3G05160 375 / 2e-125 Major facilitator superfamily protein (.1.2) AT3G05165 375 / 3e-125 Major facilitator superfamily protein (.1.2.3.4.5) AT3G05400 372 / 2e-124 Major facilitator superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035356 [exp] 748 / 0 AT1G54730 430 / 2e-147 Major facilitator superfamily protein (.1.2.3) Lus10029961 [exp] 625 / 0 AT1G54730 429 / 3e-144 Major facilitator superfamily protein (.1.2.3) Lus10029962 [exp] 619 / 0 AT1G54730 451 / 2e-155 Major facilitator superfamily protein (.1.2.3) Lus10029964 [exp] 590 / 0 AT1G54730 419 / 2e-142 Major facilitator superfamily protein (.1.2.3) Lus10029963 [exp] 446 / 2e-154 AT1G54730 322 / 9e-107 Major facilitator superfamily protein (.1.2.3) Lus10035354 [exp] 440 / 2e-150 AT1G54730 615 / 0.0 Major facilitator superfamily protein (.1.2.3) Lus10033812 [exp] 412 / 2e-139 AT1G08930 499 / 1e-174 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) Lus10029629 [exp] 387 / 6e-130 AT2G48020 661 / 0.0 Major facilitator superfamily protein (.1.2) Lus10033814 [exp] 387 / 9e-130 AT1G08920 466 / 8e-162 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G039900 [exp] 454 / 5e-156 AT1G08920 461 / 1e-159 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) Potri.005G037000 [exp] 453 / 1e-155 AT1G08920 483 / 3e-168 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) Potri.013G027500 [exp] 452 / 2e-155 AT1G54730 606 / 0.0 Major facilitator superfamily protein (.1.2.3) Potri.013G027700 [exp] 447 / 1e-153 AT1G08930 483 / 6e-168 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) Potri.002G212900 [exp] 407 / 1e-137 AT2G48020 723 / 0.0 Major facilitator superfamily protein (.1.2) Potri.013G027800 [exp] 395 / 4e-133 AT5G27360 405 / 6e-138 Major facilitator superfamily protein (.1) Potri.014G136600 [exp] 394 / 1e-132 AT2G48020 665 / 0.0 Major facilitator superfamily protein (.1.2) Potri.010G026500 [exp] 386 / 2e-129 AT5G18840 686 / 0.0 Major facilitator superfamily protein (.1) Potri.005G040000 [exp] 372 / 6e-124 AT1G54730 429 / 2e-147 Major facilitator superfamily protein (.1.2.3) Potri.007G024300 [exp] 314 / 2e-101 AT1G75220 702 / 0.0 ERD6-like 6, Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10029960 pacid=23159714 polypeptide=Lus10029960 locus=Lus10029960.g ID=Lus10029960.BGIv1.0 annot-version=v1.0 ATGGAGGAAGAAATTCTTGAGAGGCTACTCGCAGCAAGGTCCGTCGCCGTCGACGTCAATCTGCCGCTGCCTAATGATGACGATCACGGCAGCGGCGATC CTGAGGTGTCTCCGGCTAGTAATTTCTGCGGTGGCGGGGCGACTCCGGTGGTGGTGTTCAGTACCATGGTTGCCGTCTGCGGTGCCTTCGCTATGGGTTG CGCCTCAGGGTACTCATCACCAGCTGGGAAAGGGATCATGAAGGACCTTAATCTCTCTGTTGCACAATTTTCAGTTTTCGGTTCAATTATGACGATTGGA GGCATGACCGGCTCGATACTGAACGGGAAGATGGCCGATCAAATCGGCCGAAAAGGCACAATGTGGGTATCTGAGGTGTTCTTCATACTTGGTTGGCTTG CCATAGCATTTGCAGAGGATTCGTTGACTTTGGACTGTGGAAGGGCTTCTGTTGGAGTTGGAGTTGGGATTGCTGGCTATGTGGTGCCAGTTTACATTGC GGAGATTACTCCGAAGAACATTCGCGGCTCCTACACATCTGCTAGCCATTTCATGACATGCTGTGGATTCTCATTGCTCTATTTCGTTGGGACAGCCGTT TCATGGCGCACTCTGGCTCGCATTGCTGCTGTGCCATCTGCATTGCATATTGTGGGATTGTTCTTCATTCCTGAGTCACCAAGATGGCTGGCTAAAGTTG GTAGAGAAGAGGACTTGGGAATGGCCCTACAAAGACTAAGAGGAAAGAAAGCTAACATCTCCAAGGAAGCAGCTGAAATTATAGAGTCAATTCGGACATG TCAAGGCCGAAAATCGGCTAAGGTTCTTGAGCTGTTCCAGCTCAGATACGCTCATGCTCTTGTCGTTGGTGTGGGACTAATGATGTTCCAGCAATTTGGT GGGACTAATGCAATTGCATACTATGCTAGGTCCATCTTTGAAGCAGCTGAATTTTCAAGTGACATTGGGTTGATATCAATGGCTATGATCCAAATCCCAA TCACAGCTGTTTCAGTCATCTTGACCGACAAGTCAGGAAGGCGACCGCTTCTCTTGGTCTCTGCTTCAGGAATGTGCTTAAATTGCTTGCTTATAGGGGT GGCGTTTGTCCTTCAAGGCTTTCACATTGCCAAGGGCATCACTCCAACCCTTGTTTGCACTGGAATCTTGGGTTTCACGGTAGCTTACTCGATCGGGATG GCTGGATTGCCCTGGCTAATCATGTCTGAGACATTTCCTATAAACATAAAAGGGACAGCAGGAAGTCTAGTGACATTGATGCACTGGTGTTGCTCATGGA TTGTCACCTACTCCTTCAATTTCCTCCTCCAATGGAGTTCTTCAGGGACATTTTTCATATTCTCTGGAATCTGTTGTGCACTGGTTGTGTTCATTGCCAA ATTGGTGCCAGAGACTAAAGGAAGAACTTTGGAGGAACTTCAAACTTCTAGTGGTCTATCTTTCACCGTAGACAATATGTTGTACTATCGAACTGAACCA AACAACAGGAGCTTGGAAATTGGATCGACTGACACCGTGACAGAATACATTAACAAATTCCAGTCCACTCATCTACCATACTCAGTCATGACCAAAGTGT AA
AA sequence Show only first row Show all	>Lus10029960 pacid=23159714 polypeptide=Lus10029960 locus=Lus10029960.g ID=Lus10029960.BGIv1.0 annot-version=v1.0 MEEEILERLLAARSVAVDVNLPLPNDDDHGSGDPEVSPASNFCGGGATPVVVFSTMVAVCGAFAMGCASGYSSPAGKGIMKDLNLSVAQFSVFGSIMTIG GMTGSILNGKMADQIGRKGTMWVSEVFFILGWLAIAFAEDSLTLDCGRASVGVGVGIAGYVVPVYIAEITPKNIRGSYTSASHFMTCCGFSLLYFVGTAV SWRTLARIAAVPSALHIVGLFFIPESPRWLAKVGREEDLGMALQRLRGKKANISKEAAEIIESIRTCQGRKSAKVLELFQLRYAHALVVGVGLMMFQQFG GTNAIAYYARSIFEAAEFSSDIGLISMAMIQIPITAVSVILTDKSGRRPLLLVSASGMCLNCLLIGVAFVLQGFHIAKGITPTLVCTGILGFTVAYSIGM AGLPWLIMSETFPINIKGTAGSLVTLMHWCCSWIVTYSFNFLLQWSSSGTFFIFSGICCALVVFIAKLVPETKGRTLEELQTSSGLSFTVDNMLYYRTEP NNRSLEIGSTDTVTEYINKFQSTHLPYSVMTKV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G54730			Major facilitator superfamily ...		Lus10029960 [exp]	0	1
AT1G54730			Major facilitator superfamily ...		Lus10029961 [exp]	1.0	0.9605
AT4G24460		CLT2	CRT (chloroquine-resistance tr...		Lus10028858 [exp]	2.0	0.9547
AT2G36290			alpha/beta-Hydrolases superfam...		Lus10008968 [exp]	3.9	0.9451
AT1G11910		ATAPA1, APA1	aspartic proteinase A1 (.1)		Lus10020024 [exp]	4.9	0.9447
AT1G70670		AtCLO4	Arabidopsis thaliana caleosin ...		Lus10014588 [exp]	4.9	0.9479
AT5G50260		CEP1	cysteine endopeptidase 1, Cyst...		Lus10042078 [exp]	8.4	0.9407
AT5G07440		GDH2	glutamate dehydrogenase 2 (.1....		Lus10043007 [exp]	11.5	0.9464
AT5G50260		CEP1	cysteine endopeptidase 1, Cyst...		Lus10018083 [exp]	15.5	0.9190
AT2G14095			unknown protein		Lus10035649 [exp]	16.5	0.9261
					Lus10022087 [exp]	17.2	0.9177

Compare expression of checked genes

Lus10029960 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.