Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54730 429 / 2e-144 Major facilitator superfamily protein (.1.2.3) AT5G27350 409 / 2e-136 SFP1 Major facilitator superfamily protein (.1) AT1G08920 404 / 3e-134 ESL1 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) AT5G27360 402 / 8e-134 SFP2 Major facilitator superfamily protein (.1) AT2G48020 402 / 9e-134 Major facilitator superfamily protein (.1.2) AT1G08930 394 / 4e-130 ERD6 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) AT3G05160 389 / 9e-129 Major facilitator superfamily protein (.1.2) AT1G08900 387 / 4e-128 Major facilitator superfamily protein (.1.2.3) AT5G18840 387 / 6e-128 Major facilitator superfamily protein (.1) AT3G05165 383 / 2e-126 Major facilitator superfamily protein (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029960 [exp] 692 / 0 AT1G54730 490 / 3e-170 Major facilitator superfamily protein (.1.2.3) Lus10029962 [exp] 664 / 0 AT1G54730 451 / 2e-155 Major facilitator superfamily protein (.1.2.3) Lus10035356 [exp] 632 / 0 AT1G54730 430 / 2e-147 Major facilitator superfamily protein (.1.2.3) Lus10029964 [exp] 626 / 0 AT1G54730 419 / 2e-142 Major facilitator superfamily protein (.1.2.3) Lus10029963 [exp] 489 / 5e-169 AT1G54730 322 / 9e-107 Major facilitator superfamily protein (.1.2.3) Lus10035354 [exp] 467 / 8e-159 AT1G54730 615 / 0.0 Major facilitator superfamily protein (.1.2.3) Lus10033812 [exp] 405 / 1e-134 AT1G08930 499 / 1e-174 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) Lus10029966 [exp] 394 / 5e-130 AT1G54730 525 / 0.0 Major facilitator superfamily protein (.1.2.3) Lus10008183 [exp] 387 / 1e-127 AT2G48020 657 / 0.0 Major facilitator superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G027700 [exp] 466 / 8e-159 AT1G08930 483 / 6e-168 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) Potri.005G037000 [exp] 466 / 2e-158 AT1G08920 483 / 3e-168 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) Potri.013G027500 [exp] 465 / 3e-158 AT1G54730 606 / 0.0 Major facilitator superfamily protein (.1.2.3) Potri.005G039900 [exp] 451 / 1e-152 AT1G08920 461 / 1e-159 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) Potri.013G027800 [exp] 409 / 3e-136 AT5G27360 405 / 6e-138 Major facilitator superfamily protein (.1) Potri.002G212900 [exp] 399 / 3e-132 AT2G48020 723 / 0.0 Major facilitator superfamily protein (.1.2) Potri.014G136600 [exp] 397 / 6e-132 AT2G48020 665 / 0.0 Major facilitator superfamily protein (.1.2) Potri.005G040000 [exp] 389 / 1e-128 AT1G54730 429 / 2e-147 Major facilitator superfamily protein (.1.2.3) Potri.010G026500 [exp] 386 / 3e-127 AT5G18840 686 / 0.0 Major facilitator superfamily protein (.1) Potri.007G024300 [exp] 315 / 7e-100 AT1G75220 702 / 0.0 ERD6-like 6, Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10029961 pacid=23159639 polypeptide=Lus10029961 locus=Lus10029961.g ID=Lus10029961.BGIv1.0 annot-version=v1.0 ATGGAAGAAGAAAGGTATTTGCAGGAGAAACTACTTGTTCGGTTACTGCCCAGGTCAGTCGCCGTGGACGTTAAGCACCAGCCGCCGCCTAATTACACTG ATGAGAGTTCTTCTGATTATAGCGACTCCTCATCGTTGCTTCCAGACGGCGGCGGTGGAGCGACTCCGGCGGTCGTGTTTAGCACCATGGTTGCCGTCTC TGGTTCTTTGGCTGCAGGTTGCGCTTCAGGATACTCATCACCAGCTGGGAAAGGAATCATGAAGGATCTTAATCTCTCTGTTTCACAATTCTCAGTCTTC GGTTCAATATTGACGATTGGAGGGATGATTGGCTCCATACTGAACGGGAAGATGGCCGATCTAATCGGCCGAAAAGGCACAATGTGGGTATCTGAGCTGT TCTTCATCGTTGGTTGGTTAGCCATAGCATTTGCTAAGGTGCCAGTCTATGTTGCGGAGATCACCCCGAAGAACATTCGTGGAGCGTTCACATCTGCTGC CCATTTCATGGGAATGTGTGGCTTTTCACTGCTCTATTTTGCTGGAACGTTCTTCTCGTGGCGCACATTGGCCCTTATCGCTGCTGTACCATCTGCATTG CACATTGTGGGACTGTTCTTCGTATCCGAGTCGCCAAGATGGCTCGCTAAAGTTGGGAGAGTAGAGGAGTTGGAATTTGTTCTACAAAGACTTAGAGGAA AGAAAGCTGACATCTCCAAGGAATCAGCTGATATTACAGAGTCGATTCGGACATGTCAAGGCCGTAAATCGGACAATGTTCTCGAGCTATTCCAGCTCAA ATACGCTCATGCTATCATCGTTGGTGTGGGGTTAATGATGTTCCAGCAATTTGGTGGGGCGAATGCTATTGCATACTATGCTAGGTCCATCTTCGAGGCA GCCGAATTTTCAAGTGACATTGGGTTGATATCAATGGCTATGATCCAAATCCCAATCACAGCTGTTTCAGTTATCTTGACCGACAAGTTAGGAAGGCGAC CGCTTCTCTTGGTAGCTCGAAATTTCAGTCAGCTTCGTTATACTGACGAACTGTTTTATCGACGATCATGGTTTTACGGTTGTAATTTTCAGGTCTCAGC CTCAGGACTGTGCTTCAGTTGTTTGCTTGTAGGCTTGGCATTTTGCCTTCAGGGGCATCATGTAGCTAAGGAGATCACTCCAAACCTTGTTTGTTTTGGA ATATTGGGTTTCACGGTTGCTTACTCAATAGGCATGGGCGGATTGCCCTGGCTAATCATGTCCGAGACATTTCCGATAAAGATAAAGGGAGCAGCTGGGA GTCTGGTGACATTGATACACTGGGGTTGCTGCTGGATTGTCACCTACTTCTTCAATTTTCTTATGGAATGGAGCTCTGCAGGAACATTTTTCATATTCTC TGGGATTTCATGTGGTGCTGTTGTGTTCATTGCCAAGTTGGTGCCAGAGACTAATGGAAGAAGTTTGGAGGAACTCCAGACATCTTTAACTAGGCCAACT GCGCCGCCCACAACAGGGAGCTATATGTCTTCCCCACTTGCCTCGAAGCGAGGTACACGGATTCAGGGCGACGCCCTGAGGAATTTCGCACCAACCATTG AGAAGCGCATATCCGTCGGTTCTGTGAATAAGATATCGGAATACTCACTCTGCCCTCCCAGTTCTTCATTCCGCTCATGGCCCTTCCCTCACTGGTTGAA TCTCACAACCACCATCAACTTTCTTGTAGACGTGCTGGGAAAGGTCGTCAAGATTGGGCCCCGCCATGTTGAACGCCCATACGGCGTCGTCCCTGTGCAA TCCGCAACCATTATCGATGCTAGTGGTTTGCGTGTTGAAGTGTCGTCATGGTCTGAACTGTCCTTTATCCTGGACGCAGATATGTTACCCCTTGATGATG TTGCTGAGCTTGTCTTCGTTGCTCTGTCAGCCTTCCGCATTGGCAGATTCCAAAGTAGCTGGATGTGTCTATACAAATTCCAACTCCGATGCACATCCTT ATCGGAGTTAGCGTTGAAAGGCTACGGTGTGATTGGAAATGAATTGACCGGGCGGCCAATGGTCCCTTAA
AA sequence Show only first row Show all	>Lus10029961 pacid=23159639 polypeptide=Lus10029961 locus=Lus10029961.g ID=Lus10029961.BGIv1.0 annot-version=v1.0 MEEERYLQEKLLVRLLPRSVAVDVKHQPPPNYTDESSSDYSDSSSLLPDGGGGATPAVVFSTMVAVSGSLAAGCASGYSSPAGKGIMKDLNLSVSQFSVF GSILTIGGMIGSILNGKMADLIGRKGTMWVSELFFIVGWLAIAFAKVPVYVAEITPKNIRGAFTSAAHFMGMCGFSLLYFAGTFFSWRTLALIAAVPSAL HIVGLFFVSESPRWLAKVGRVEELEFVLQRLRGKKADISKESADITESIRTCQGRKSDNVLELFQLKYAHAIIVGVGLMMFQQFGGANAIAYYARSIFEA AEFSSDIGLISMAMIQIPITAVSVILTDKLGRRPLLLVARNFSQLRYTDELFYRRSWFYGCNFQVSASGLCFSCLLVGLAFCLQGHHVAKEITPNLVCFG ILGFTVAYSIGMGGLPWLIMSETFPIKIKGAAGSLVTLIHWGCCWIVTYFFNFLMEWSSAGTFFIFSGISCGAVVFIAKLVPETNGRSLEELQTSLTRPT APPTTGSYMSSPLASKRGTRIQGDALRNFAPTIEKRISVGSVNKISEYSLCPPSSSFRSWPFPHWLNLTTTINFLVDVLGKVVKIGPRHVERPYGVVPVQ SATIIDASGLRVEVSSWSELSFILDADMLPLDDVAELVFVALSAFRIGRFQSSWMCLYKFQLRCTSLSELALKGYGVIGNELTGRPMVP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G54730			Major facilitator superfamily ...		Lus10029961 [exp]	0	1
AT1G54730			Major facilitator superfamily ...		Lus10029960 [exp]	1.0	0.9605
AT1G68290		ENDO2 ,ENDO 2	endonuclease 2 (.1)		Lus10034336 [exp]	2.0	0.9456
AT1G70670		AtCLO4	Arabidopsis thaliana caleosin ...		Lus10014588 [exp]	2.8	0.9575
AT4G24460		CLT2	CRT (chloroquine-resistance tr...		Lus10028858 [exp]	4.2	0.9460
AT5G42610			Protein of unknown function (D...		Lus10010793 [exp]	4.5	0.9403
AT2G37030			SAUR-like auxin-responsive pro...		Lus10013808 [exp]	7.7	0.9303
					Lus10005025 [exp]	10.7	0.8859
AT5G50260		CEP1	cysteine endopeptidase 1, Cyst...		Lus10042078 [exp]	13.5	0.9254
AT3G14360			alpha/beta-Hydrolases superfam...		Lus10037465 [exp]	14.0	0.9113
AT3G61930			unknown protein		Lus10030203 [exp]	14.1	0.9106

Compare expression of checked genes

Lus10029961 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.