Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27360 431 / 5e-147 SFP2 Major facilitator superfamily protein (.1) AT1G54730 428 / 3e-146 Major facilitator superfamily protein (.1.2.3) AT5G27350 422 / 8e-144 SFP1 Major facilitator superfamily protein (.1) AT1G08920 417 / 5e-142 ESL1 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) AT3G05165 416 / 2e-141 Major facilitator superfamily protein (.1.2.3.4.5) AT1G08930 414 / 2e-140 ERD6 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) AT2G48020 413 / 2e-140 Major facilitator superfamily protein (.1.2) AT3G05160 406 / 8e-138 Major facilitator superfamily protein (.1.2) AT5G18840 405 / 4e-137 Major facilitator superfamily protein (.1) AT1G08900 398 / 1e-134 Major facilitator superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029960 [exp] 679 / 0 AT1G54730 490 / 3e-170 Major facilitator superfamily protein (.1.2.3) Lus10029964 [exp] 637 / 0 AT1G54730 419 / 2e-142 Major facilitator superfamily protein (.1.2.3) Lus10029961 [exp] 634 / 0 AT1G54730 429 / 3e-144 Major facilitator superfamily protein (.1.2.3) Lus10035356 [exp] 628 / 0 AT1G54730 430 / 2e-147 Major facilitator superfamily protein (.1.2.3) Lus10029963 [exp] 461 / 3e-160 AT1G54730 322 / 9e-107 Major facilitator superfamily protein (.1.2.3) Lus10035354 [exp] 442 / 9e-152 AT1G54730 615 / 0.0 Major facilitator superfamily protein (.1.2.3) Lus10033812 [exp] 431 / 3e-147 AT1G08930 499 / 1e-174 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) Lus10035355 [exp] 404 / 2e-138 AT5G27350 253 / 1e-80 Major facilitator superfamily protein (.1) Lus10008183 [exp] 404 / 2e-136 AT2G48020 657 / 0.0 Major facilitator superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G039900 [exp] 490 / 1e-170 AT1G08920 461 / 1e-159 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) Potri.005G037000 [exp] 468 / 8e-162 AT1G08920 483 / 3e-168 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) Potri.013G027700 [exp] 463 / 6e-160 AT1G08930 483 / 6e-168 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) Potri.013G027500 [exp] 460 / 1e-158 AT1G54730 606 / 0.0 Major facilitator superfamily protein (.1.2.3) Potri.002G212900 [exp] 425 / 7e-145 AT2G48020 723 / 0.0 Major facilitator superfamily protein (.1.2) Potri.013G027800 [exp] 422 / 5e-144 AT5G27360 405 / 6e-138 Major facilitator superfamily protein (.1) Potri.010G026500 [exp] 411 / 2e-139 AT5G18840 686 / 0.0 Major facilitator superfamily protein (.1) Potri.014G136600 [exp] 409 / 1e-138 AT2G48020 665 / 0.0 Major facilitator superfamily protein (.1.2) Potri.005G040000 [exp] 400 / 3e-135 AT1G54730 429 / 2e-147 Major facilitator superfamily protein (.1.2.3) Potri.007G024300 [exp] 331 / 4e-108 AT1G75220 702 / 0.0 ERD6-like 6, Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10029962 pacid=23159673 polypeptide=Lus10029962 locus=Lus10029962.g ID=Lus10029962.BGIv1.0 annot-version=v1.0 ATGGAGGAAGAAAATAAATGCTTGCAGGAGAAGTTACTTCCTCCTCCTCTTCATCCCAACTCAGTCGCCGTCGATGTCAACGAAGACGACAACTCCGCCA GTAGCGGCGGTGGTGGGTCGACACCAGCTCTTGTGTTGAGCACGGTGGTCGCCCTCTGTGGAGCCTTTGCTATGGGTTGCGCTTCAGGATACTCATCACC AGCTGGGAATGGGATCATGAAGGACCTTAATCTCTCTGTTTCACAATTCTCTGTTTTCGGTTCCATAATGACGATTGGAGGCATGATCGGCTCGGTAATC AACGGGAAGATGGCCGATCGAATCGGCCGAAAACGAACAATGTGGGTATCCGAGTTGTTCTTCATCGTTGGTTGGTTAGCCATAGCATTTGCTAAGGATT CATTGGCTTTGGACCTTGGAAGGGCTTCAATTGGTGTTGGAGTAGGGATTGCTTGCTATGTGGTGCCAATTTATATTGCAGAGATCACTCCGAAGAACAT TCGTGGCGCCTACACATCTACTTGCCATTTCATGTCAATGTGTGGCGGCTCACTGCTCTACTTAGCTGGAACTATGATCTCGTGGCGCGCTTTAGCTCTC ATTGGTAACGGAAGTTTGATCTGGTTCTTCACTCTTGTGCCATCTGCATTGCACATTGTCGGATTGTTCTTCATCCCCGAGTCGCCTAGATGGCTGGCTA AATCTGGGAGAGATGAAGAGTTGGAGTTGGTACTTCAACAACTTAGAGGAAATAAAGCTGACATCACTCAAGAAGCTGCTGATATCACAGAGTCGATTGA GATAAGTCAAGGCCGTAAACCAGATAAGGTTCTCGAGTTGTTCCAGCTCAAATATGCTCATGCTATCGTTGTTGGTGTGGGACTAATGATGTTCCAGCAA TTTGGTGGGACTAATGCAATTGCATACTATGCTGGATCCATCTTTGATGCAGCTGGTACAAAAAACTCACCAGCTACTCATGAAATATTTCTACATTTCA CCTTTAACAAAGAAGTGATGGATTGTTTTGTTGCTTTAGAATTTTCGAGCTACATTGGATTAATATCAATCGCAGCGATCCAATTTCCAATTGCAGCTGT TTCTGTCCTCTTAACCGACAAGTCCGGAAGGCGACCCCTTCTCCTGGTCTCTGCCTCAGGAATGTGCTTAAGTTGCTTGCTTATAGGCCTAGCATTTTGC CTCCAGGGGTTTCATATAGCTAAGGAACTCACTCCAAACATTGTCTGCACTGGAATATTGGGTTTCACGGTGGCTTACTCGATAGGCATGGGTGGATTAC CCTGGCTAATCATGTCCGAGACATTTCCAATAAAGATAAAGGGAACAGCGGGGAGTCTAGTGACATTGATCTACTGGAGTTGCTCCTGGATTGTCACCTA TTCCTTCAATTTTCTCATGGAATGGAGCTCTGCAGGGACATTTTTCATATTCGCTGGAATCTCATGTGGTGCTGTTCTGTTCATTGCGAAATTGGTGCCG GAGACTAAGGGGAGAACTTTGGAAGAACTTGAGGCTTCTTTCACTAGGTCTAGTGATATTGTTTGCTAA
AA sequence Show only first row Show all	>Lus10029962 pacid=23159673 polypeptide=Lus10029962 locus=Lus10029962.g ID=Lus10029962.BGIv1.0 annot-version=v1.0 MEEENKCLQEKLLPPPLHPNSVAVDVNEDDNSASSGGGGSTPALVLSTVVALCGAFAMGCASGYSSPAGNGIMKDLNLSVSQFSVFGSIMTIGGMIGSVI NGKMADRIGRKRTMWVSELFFIVGWLAIAFAKDSLALDLGRASIGVGVGIACYVVPIYIAEITPKNIRGAYTSTCHFMSMCGGSLLYLAGTMISWRALAL IGNGSLIWFFTLVPSALHIVGLFFIPESPRWLAKSGRDEELELVLQQLRGNKADITQEAADITESIEISQGRKPDKVLELFQLKYAHAIVVGVGLMMFQQ FGGTNAIAYYAGSIFDAAGTKNSPATHEIFLHFTFNKEVMDCFVALEFSSYIGLISIAAIQFPIAAVSVLLTDKSGRRPLLLVSASGMCLSCLLIGLAFC LQGFHIAKELTPNIVCTGILGFTVAYSIGMGGLPWLIMSETFPIKIKGTAGSLVTLIYWSCSWIVTYSFNFLMEWSSAGTFFIFAGISCGAVLFIAKLVP ETKGRTLEELEASFTRSSDIVC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G54730			Major facilitator superfamily ...		Lus10029962 [exp]	0	1
AT1G27770		PEA1, ACA1	PLASTID ENVELOPE ATPASE 1, aut...		Lus10018687 [exp]	10.6	0.7011
AT1G26300			BSD domain-containing protein ...		Lus10019194 [exp]	15.7	0.7345
AT4G21215			unknown protein		Lus10007639 [exp]	18.9	0.7260
AT1G75500		WAT1	Walls Are Thin 1 (.1.2)		Lus10041801 [exp]	29.4	0.6698
AT2G34930			disease resistance family prot...		Lus10041266 [exp]	33.7	0.6314
AT3G58310			Domain of unknown function (DU...		Lus10042124 [exp]	40.0	0.6224
AT4G37700			unknown protein		Lus10025207 [exp]	41.9	0.6331
AT1G19430			S-adenosyl-L-methionine-depend...		Lus10000716 [exp]	47.5	0.6822
AT2G30710			Ypt/Rab-GAP domain of gyp1p su...		Lus10008148 [exp]	61.9	0.6477
AT4G40080			ENTH/ANTH/VHS superfamily prot...		Lus10002642 [exp]	75.8	0.6556

Compare expression of checked genes

Lus10029962 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.