Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G48020 273 / 1e-87 Major facilitator superfamily protein (.1.2) AT1G54730 269 / 5e-86 Major facilitator superfamily protein (.1.2.3) AT1G08920 268 / 9e-86 ESL1 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) AT5G27350 262 / 2e-83 SFP1 Major facilitator superfamily protein (.1) AT5G27360 260 / 1e-82 SFP2 Major facilitator superfamily protein (.1) AT3G05160 252 / 1e-79 Major facilitator superfamily protein (.1.2) AT3G05165 251 / 3e-79 Major facilitator superfamily protein (.1.2.3.4.5) AT3G05400 249 / 1e-78 Major facilitator superfamily protein (.1.2) AT5G18840 249 / 3e-78 Major facilitator superfamily protein (.1) AT3G05155 239 / 3e-76 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029960 [exp] 441 / 2e-152 AT1G54730 490 / 3e-170 Major facilitator superfamily protein (.1.2.3) Lus10029961 [exp] 444 / 2e-151 AT1G54730 429 / 3e-144 Major facilitator superfamily protein (.1.2.3) Lus10035356 [exp] 432 / 2e-149 AT1G54730 430 / 2e-147 Major facilitator superfamily protein (.1.2.3) Lus10029964 [exp] 431 / 1e-148 AT1G54730 419 / 2e-142 Major facilitator superfamily protein (.1.2.3) Lus10029962 [exp] 423 / 1e-145 AT1G54730 451 / 2e-155 Major facilitator superfamily protein (.1.2.3) Lus10035355 [exp] 333 / 1e-112 AT5G27350 253 / 1e-80 Major facilitator superfamily protein (.1) Lus10035354 [exp] 279 / 7e-90 AT1G54730 615 / 0.0 Major facilitator superfamily protein (.1.2.3) Lus10029965 [exp] 271 / 1e-88 AT4G04750 283 / 2e-92 Major facilitator superfamily protein (.1) Lus10008183 [exp] 265 / 3e-84 AT2G48020 657 / 0.0 Major facilitator superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G027700 [exp] 298 / 3e-97 AT1G08930 483 / 6e-168 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) Potri.005G037000 [exp] 291 / 2e-94 AT1G08920 483 / 3e-168 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) Potri.013G027500 [exp] 290 / 4e-94 AT1G54730 606 / 0.0 Major facilitator superfamily protein (.1.2.3) Potri.005G039900 [exp] 270 / 1e-86 AT1G08920 461 / 1e-159 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) Potri.002G212900 [exp] 270 / 3e-86 AT2G48020 723 / 0.0 Major facilitator superfamily protein (.1.2) Potri.010G026500 [exp] 256 / 1e-80 AT5G18840 686 / 0.0 Major facilitator superfamily protein (.1) Potri.014G136600 [exp] 254 / 3e-80 AT2G48020 665 / 0.0 Major facilitator superfamily protein (.1.2) Potri.005G040000 [exp] 252 / 1e-79 AT1G54730 429 / 2e-147 Major facilitator superfamily protein (.1.2.3) Potri.013G027800 [exp] 230 / 8e-71 AT5G27360 405 / 6e-138 Major facilitator superfamily protein (.1) Potri.002G259900 [exp] 189 / 3e-55 AT1G75220 744 / 0.0 ERD6-like 6, Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10029963 pacid=23159779 polypeptide=Lus10029963 locus=Lus10029963.g ID=Lus10029963.BGIv1.0 annot-version=v1.0 ATGGAGGAAGGTAGGCGTTTGCAGGCGAAGTTACTTCAGCCCGACTCAGTCGCCATCGACGTGAAACAGCCGCCGCCGCCTGACTACAGCGACTCGTCGA CATCGTCACTGGCTAGTAATGGTGGCGGGTCAACCCCGGCGGTCGTGTTTAGCACCACGGTTGCCTTCTCCGGTGCCATCGCTATGGGTTGCGCTATAGG ATACTCATCACCAGCTGGGAATGGGATCATGAAGGACCTCAATCTCTCTGTTGCACAATTCTCCGTTTTCGGTTCAATAATGACGATTGGTGGGATGATT GGCTCGATACTGACCGGGAAGATGGCCGATATAATTGGCCGAAAAGGCGCAATGTGGGTATCTGAGTTGTTCTTCATCCTTGGTTGGTTAGCCATAGTGT CTGCTAAGGATTCATTGGCTTTGGACCTTGGAAGGGCTTCAATTGGAGTTGGAGTCGGGATTGGTTGCTATGTGGTGCCAGTTTATGTTGCAGAGATCAC CCCGAAGAACATTCGTGGCGCCTACACATCTGCTGGCCATTTCATGTCAATGTGTGGCTCCTCTCTCCTGTACTTTGCTGGAACTTTGGTCTCGTGGCGC TCTTTAGCTCTCATTGCTGCTGTGCCATCTGCATTGCACATTGTGGGATTGTTCTTCATACCCGAATCGCCAAGATGGCTGGCTAAAGTTGGGAGAGAAG ATGAGTTGGAATTGGTTCTACAAAAACTTAGAGGAAAGAAAGCTGTCATTTCTAAAGAAGCAGCTGATATTATGGAGTCAATTCAGACATTGCAAGGTTG TAAATCAGAGAAGGTTATCGATCTGTTCCAGCTCAAATATGTACATGCTATTGTGGTTGGGGTGGGACTAATGCTGTTCCAGCAATTTAGTGGGGCTAAT GCAATTACATACTATGCAATGACCATATTTGAGGCAGCTGAATTTTCAAGCTACATTGGGCTGATATCAATGGCAGCAATCCAGCTTCCTATCACAGCTA TTTCAGTCCTCCTAACCGACAAGTCGGGAAGGCGACCGCTTCTCTTGGTAGCTAGAAATTTTGGTCACTGGACATTTTTCCTATTCGCTGGTTTCTCATG TGGAGCTGTTATGTTCATTGCCAAATTGGTGCCAGAGACTAAGGGGAGAACTCTGGAGGAACTTCAGACTTCTTTAACGTAG
AA sequence Show only first row Show all	>Lus10029963 pacid=23159779 polypeptide=Lus10029963 locus=Lus10029963.g ID=Lus10029963.BGIv1.0 annot-version=v1.0 MEEGRRLQAKLLQPDSVAIDVKQPPPPDYSDSSTSSLASNGGGSTPAVVFSTTVAFSGAIAMGCAIGYSSPAGNGIMKDLNLSVAQFSVFGSIMTIGGMI GSILTGKMADIIGRKGAMWVSELFFILGWLAIVSAKDSLALDLGRASIGVGVGIGCYVVPVYVAEITPKNIRGAYTSAGHFMSMCGSSLLYFAGTLVSWR SLALIAAVPSALHIVGLFFIPESPRWLAKVGREDELELVLQKLRGKKAVISKEAADIMESIQTLQGCKSEKVIDLFQLKYVHAIVVGVGLMLFQQFSGAN AITYYAMTIFEAAEFSSYIGLISMAAIQLPITAISVLLTDKSGRRPLLLVARNFGHWTFFLFAGFSCGAVMFIAKLVPETKGRTLEELQTSLT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G54730			Major facilitator superfamily ...		Lus10029963 [exp]	0	1
AT5G56170		LLG1	LORELEI-LIKE-GPI-ANCHORED PROT...		Lus10027120 [exp]	4.2	0.8518
AT5G51780	bHLH	bHLH036	basic helix-loop-helix (bHLH) ...		Lus10031677 [exp]	4.8	0.8734
AT1G09570		FHY2, HY8, FRE1...	ELONGATED HYPOCOTYL 8, FAR RED...		Lus10007594 [exp]	12.2	0.8579
AT1G10740			alpha/beta-Hydrolases superfam...		Lus10030904 [exp]	14.6	0.8500
AT2G21540		ATSFH3	SEC14-like 3 (.1.2.3)		Lus10042303 [exp]	18.5	0.8313
AT4G25330			unknown protein		Lus10006358 [exp]	19.0	0.8262
AT1G64960		HEB1	hypersensitive to excess boron...		Lus10025198 [exp]	20.0	0.8452
					Lus10017966 [exp]	20.1	0.8342
AT2G38750		ANNAT4	annexin 4 (.1)		Lus10024171 [exp]	20.5	0.8460
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Lus10022883 [exp]	22.8	0.8428

Compare expression of checked genes

Lus10029963 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.