Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54730 387 / 6e-130 Major facilitator superfamily protein (.1.2.3) AT2G48020 384 / 4e-129 Major facilitator superfamily protein (.1.2) AT5G27360 383 / 2e-128 SFP2 Major facilitator superfamily protein (.1) AT5G27350 380 / 2e-127 SFP1 Major facilitator superfamily protein (.1) AT1G08930 368 / 3e-122 ERD6 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) AT5G18840 367 / 5e-122 Major facilitator superfamily protein (.1) AT3G05165 366 / 6e-122 Major facilitator superfamily protein (.1.2.3.4.5) AT3G05160 366 / 6e-122 Major facilitator superfamily protein (.1.2) AT1G08920 363 / 2e-120 ESL1 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) AT3G05400 355 / 9e-118 Major facilitator superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029960 [exp] 633 / 0 AT1G54730 490 / 3e-170 Major facilitator superfamily protein (.1.2.3) Lus10029962 [exp] 615 / 0 AT1G54730 451 / 2e-155 Major facilitator superfamily protein (.1.2.3) Lus10029961 [exp] 594 / 0 AT1G54730 429 / 3e-144 Major facilitator superfamily protein (.1.2.3) Lus10035356 [exp] 563 / 0 AT1G54730 430 / 2e-147 Major facilitator superfamily protein (.1.2.3) Lus10029963 [exp] 459 / 3e-159 AT1G54730 322 / 9e-107 Major facilitator superfamily protein (.1.2.3) Lus10035354 [exp] 403 / 3e-136 AT1G54730 615 / 0.0 Major facilitator superfamily protein (.1.2.3) Lus10033812 [exp] 370 / 2e-123 AT1G08930 499 / 1e-174 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) Lus10029629 [exp] 367 / 3e-122 AT2G48020 661 / 0.0 Major facilitator superfamily protein (.1.2) Lus10008183 [exp] 362 / 6e-120 AT2G48020 657 / 0.0 Major facilitator superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G027700 [exp] 421 / 5e-143 AT1G08930 483 / 6e-168 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) Potri.005G039900 [exp] 415 / 9e-141 AT1G08920 461 / 1e-159 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) Potri.005G037000 [exp] 414 / 3e-140 AT1G08920 483 / 3e-168 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) Potri.013G027500 [exp] 412 / 1e-139 AT1G54730 606 / 0.0 Major facilitator superfamily protein (.1.2.3) Potri.002G212900 [exp] 379 / 1e-126 AT2G48020 723 / 0.0 Major facilitator superfamily protein (.1.2) Potri.010G026500 [exp] 370 / 4e-123 AT5G18840 686 / 0.0 Major facilitator superfamily protein (.1) Potri.013G027800 [exp] 366 / 8e-122 AT5G27360 405 / 6e-138 Major facilitator superfamily protein (.1) Potri.014G136600 [exp] 365 / 3e-121 AT2G48020 665 / 0.0 Major facilitator superfamily protein (.1.2) Potri.005G040000 [exp] 361 / 1e-119 AT1G54730 429 / 2e-147 Major facilitator superfamily protein (.1.2.3) Potri.007G024300 [exp] 295 / 4e-94 AT1G75220 702 / 0.0 ERD6-like 6, Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10029964 pacid=23159819 polypeptide=Lus10029964 locus=Lus10029964.g ID=Lus10029964.BGIv1.0 annot-version=v1.0 ATGGAGGAAGAAAGGTGTTTGCAGGAGAAGTTACTTCTTCGTCTTCAGCCCAATTCATCAGTCGCCGTCGACGTCAACCCGCCACAGCCGGAGGGTAATT CTAGCGGCGGCGGGGCGACCCCGGTGGTTGTGCTTAGTACCATGGTTGTCTTCTCCGGTGCATTAGCTGCGGGTTGCGCTGAAGAAAGGTGTTTGCACGA CAAGTTACTTCTTCGTCTTCACCCCAACTCGGTCGCCGTCGACGTCAACCCGCTGCAGGCGCCTACTCAGCCGGACGGTGATTCTAGCGGCGGCGGGGCA ACCACGATGGTTGTGTTTAGTACCATGGTTGCCTTCTCCGGTGCCTTAGCTGCGGGTTGCGCTTTCTCTGTTTTTGGTTCAATCATGACGATTGGAGGCA TGATCGGCTCCATACTGAATGGGAAGATGGCCGATCTAATTGGCCGAAAAGGCGCAATGTGGGTATCTGAGCTGTTCTTTATCCTTGGTTGGTTAGCCAT AGCATCTGCTAAGGATTCATTGACTTTGGACCTTGGGAGGGCTTCAATTGGAGTTGGACTTGGCATTGCTTGCTATGCGGTGCCAGTTTATATTGCAGAG ATCACCCCGAAGAACATCCGTGGCGCGTACACATCTGCTAGCCACTTCATGAATATGTGTGGCTCCTCATTCCTGTACTTTGTTGGAACTTTGGTCTCGT GGCGTGCTTTAGCTCTCATTGCTGCTGTGCCATCTGCATTGCACATTTTGGGGTTATTCTTCATCCCTGAATCACCAAGATGGCTGGCTAAAGTTGGGAG AGAAGATGAGTTGGAATTAGTTCTACAAAGACTAAGAGGAAAGAAAGCATACATCTCCAAGGAAGCAGCTGATATTATAGACTCAGTTCAGACATGTCAG GGTCAGAAATCGGACAAGGTTCTCGAGCTATTCCAGCTCAAATATGTTCATGCTATCGTTGTTGGTGTTGGGCTAATGATGTTCCAGCAATTTAGCGGGA CTACTGCAATTACATACTATGCAATGTCCATATTCGAGGCAGCTGAATTTTCAAGCTACATTGGGTCGATATCAATTGCTGCAATCCAACTTCCAATCAC AGCTGTTTCTTCCCTTCTCACCGACAAGTCGGGAAGGCGACCCCTTCTCTTGATATCAGCCTCAGGGATGTGCTTGAGTTGCTTGCTTATAGGCGTGGCA TTTAGCCTTCAGGGGTTTCATATAGCTAAGGAACTCACTCCAATCCTTGTTTGTGTCGGAATACTGGTATTGCCTTTTGTGATCCGGCAGAGTTTCACGG TGACTTACTCGATAGGAATGGGCGGATTGCCATGGCTAATCATGTCTGAGACATTTCCAATAGAGATAAAGGGAACAGCTGGAAGTCTGGTGACATTGGT CTACTGGAGTTGCTGCTGGATTGTCTCCTATTTCTTCTATTTTCTCATGGAATGGAGCTCTGCAGGGACATTTTTCGTATCGGCTGGCTTCTCATGTGCT GCTGTTGTGTTCATTGTCAAGTTGGTGCCAGAGACTAAGGGGAGAACTTTGGAAGAAATCCAGCCTTCTATTGTTAGGTCTACCAATATTGATGAATAA
AA sequence Show only first row Show all	>Lus10029964 pacid=23159819 polypeptide=Lus10029964 locus=Lus10029964.g ID=Lus10029964.BGIv1.0 annot-version=v1.0 MEEERCLQEKLLLRLQPNSSVAVDVNPPQPEGNSSGGGATPVVVLSTMVVFSGALAAGCAEERCLHDKLLLRLHPNSVAVDVNPLQAPTQPDGDSSGGGA TTMVVFSTMVAFSGALAAGCAFSVFGSIMTIGGMIGSILNGKMADLIGRKGAMWVSELFFILGWLAIASAKDSLTLDLGRASIGVGLGIACYAVPVYIAE ITPKNIRGAYTSASHFMNMCGSSFLYFVGTLVSWRALALIAAVPSALHILGLFFIPESPRWLAKVGREDELELVLQRLRGKKAYISKEAADIIDSVQTCQ GQKSDKVLELFQLKYVHAIVVGVGLMMFQQFSGTTAITYYAMSIFEAAEFSSYIGSISIAAIQLPITAVSSLLTDKSGRRPLLLISASGMCLSCLLIGVA FSLQGFHIAKELTPILVCVGILVLPFVIRQSFTVTYSIGMGGLPWLIMSETFPIEIKGTAGSLVTLVYWSCCWIVSYFFYFLMEWSSAGTFFVSAGFSCA AVVFIVKLVPETKGRTLEEIQPSIVRSTNIDE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G54730			Major facilitator superfamily ...		Lus10029964 [exp]	0	1
AT1G08070		EMB3102, OTP82	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10030053 [exp]	2.0	0.9159
AT2G38570			unknown protein		Lus10022733 [exp]	4.5	0.8897
AT5G06600		AtUBP12, UBP12	ubiquitin-specific protease 12...		Lus10027030 [exp]	4.8	0.8679
AT3G44800			Meprin and TRAF (MATH) homolog...		Lus10013547 [exp]	5.5	0.8792
AT1G12250			Pentapeptide repeat-containing...		Lus10024602 [exp]	6.9	0.9158
					Lus10023773 [exp]	7.7	0.9065
AT3G17930			unknown protein		Lus10042280 [exp]	9.4	0.9041
					Lus10042279 [exp]	9.4	0.8855
AT3G47650			DnaJ/Hsp40 cysteine-rich domai...		Lus10002020 [exp]	11.2	0.9011
AT1G66370	MYB	ATMYB113	myb domain protein 113 (.1)		Lus10028513 [exp]	11.5	0.8446

Compare expression of checked genes

Lus10029964 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.