Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54730 277 / 6e-90 Major facilitator superfamily protein (.1.2.3) AT5G27360 270 / 6e-87 SFP2 Major facilitator superfamily protein (.1) AT5G27350 270 / 6e-87 SFP1 Major facilitator superfamily protein (.1) AT1G08920 263 / 8e-85 ESL1 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) AT3G05165 259 / 4e-83 Major facilitator superfamily protein (.1.2.3.4.5) AT2G48020 258 / 8e-83 Major facilitator superfamily protein (.1.2) AT3G05160 254 / 3e-81 Major facilitator superfamily protein (.1.2) AT1G08890 250 / 2e-79 Major facilitator superfamily protein (.1) AT1G08930 249 / 1e-78 ERD6 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) AT1G08900 244 / 2e-77 Major facilitator superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029963 [exp] 326 / 6e-110 AT1G54730 322 / 9e-107 Major facilitator superfamily protein (.1.2.3) Lus10029962 [exp] 313 / 2e-103 AT1G54730 451 / 2e-155 Major facilitator superfamily protein (.1.2.3) Lus10035356 [exp] 305 / 2e-100 AT1G54730 430 / 2e-147 Major facilitator superfamily protein (.1.2.3) Lus10029960 [exp] 305 / 8e-100 AT1G54730 490 / 3e-170 Major facilitator superfamily protein (.1.2.3) Lus10029966 [exp] 300 / 3e-98 AT1G54730 525 / 0.0 Major facilitator superfamily protein (.1.2.3) Lus10035355 [exp] 295 / 3e-98 AT5G27350 253 / 1e-80 Major facilitator superfamily protein (.1) Lus10035354 [exp] 296 / 5e-97 AT1G54730 615 / 0.0 Major facilitator superfamily protein (.1.2.3) Lus10029961 [exp] 282 / 2e-89 AT1G54730 429 / 3e-144 Major facilitator superfamily protein (.1.2.3) Lus10033812 [exp] 265 / 5e-85 AT1G08930 499 / 1e-174 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G039900 [exp] 295 / 9e-97 AT1G08920 461 / 1e-159 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) Potri.005G037000 [exp] 295 / 1e-96 AT1G08920 483 / 3e-168 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) Potri.013G027500 [exp] 293 / 4e-96 AT1G54730 606 / 0.0 Major facilitator superfamily protein (.1.2.3) Potri.013G027700 [exp] 286 / 3e-93 AT1G08930 483 / 6e-168 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) Potri.005G040000 [exp] 282 / 8e-92 AT1G54730 429 / 2e-147 Major facilitator superfamily protein (.1.2.3) Potri.002G212900 [exp] 262 / 9e-84 AT2G48020 723 / 0.0 Major facilitator superfamily protein (.1.2) Potri.014G136600 [exp] 256 / 1e-81 AT2G48020 665 / 0.0 Major facilitator superfamily protein (.1.2) Potri.013G027800 [exp] 251 / 1e-79 AT5G27360 405 / 6e-138 Major facilitator superfamily protein (.1) Potri.010G026500 [exp] 251 / 2e-79 AT5G18840 686 / 0.0 Major facilitator superfamily protein (.1) Potri.007G024300 [exp] 207 / 9e-63 AT1G75220 702 / 0.0 ERD6-like 6, Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10029965 pacid=23159743 polypeptide=Lus10029965 locus=Lus10029965.g ID=Lus10029965.BGIv1.0 annot-version=v1.0 ATGGGGCAGTTAGCCTACGAGGAGGAGGAAGTAGAGCTGGAAACTGGGCTTCTACTACCGCCCTATGTGGACGACGTCTTATCGCTCACCCCTGCCGTCG CCGTTACTGCTTTGGTCGCCGTCTTCGGCTCCATGGCCACCGGTTGTGCTTATGGATACTCATCACCAGCAGAGTCAGGAATCATAGCAGAAATCGGAAT GTCTGTAGCACAATACTCTACCTTTGGATCAATCATGACAATTGGAGGAATGCTGGGCTCTTTAGTCAATGGCAAGATGGCTGATCTCATTGGCAGGAGA TATACAATGTGGGTGTCTGAGGTGTTCTTCCTAGCTTCCTGGTTTGTTATAGCATTTGCTAAGGTTCCATGGCTGCTGGATTTCGGAAGGTTGATCATGG GATTCGCAGTAGCAATCAATGCCTACGTTGTACCGGTCTACATCGCAGAGATCACACCAAAGAACATCCGTGGCACACTCACATCTACTCATCAGTTCAT GCTTACATTTGGGTTTTCGACGGTCTACTTGACCGGGACCTTGATATCGTGGAGGGCATTGGCTCTAGTTGGTGCAGTGCCATGTCTACTTCAAGTGTTT GGCGTGTTCTTCATCCCGGAGTCTCCAAGATGGCTAGCGAAAGTTGGCAGAGACAAAGAGCTAGAAGAAACCCTCAAGTACCTCAGGGGAAAAGGTTCTG ATGTTTCTCAAGAAGCACTTGACATTAAAGAACATACTAAGTTCTTTGAAAGCCTTTCGGGGAACGGGATTCTCGACTTGTTCCAGCTGAAATACGCAAA CGCACTCGTTGTCGTCTCGGGACTGATGGTGCTTCAGGAGTTTGGAGGGACCAATGCATTTGGATACTATGCTGCTTCTATATGTGAAATGGCTGGTACA TTCTTCATCTTCTCAGGGGTATGGGTATTAGGAGTTATGTTCATCACAAAGTTTGTCCCAGAGACTAAAGGGAAGACACTTGAAGAACTGCAGACTTCTA TAACTCATGTTCTATCGGCAAAAGAAGAAGGCTAA
AA sequence Show only first row Show all	>Lus10029965 pacid=23159743 polypeptide=Lus10029965 locus=Lus10029965.g ID=Lus10029965.BGIv1.0 annot-version=v1.0 MGQLAYEEEEVELETGLLLPPYVDDVLSLTPAVAVTALVAVFGSMATGCAYGYSSPAESGIIAEIGMSVAQYSTFGSIMTIGGMLGSLVNGKMADLIGRR YTMWVSEVFFLASWFVIAFAKVPWLLDFGRLIMGFAVAINAYVVPVYIAEITPKNIRGTLTSTHQFMLTFGFSTVYLTGTLISWRALALVGAVPCLLQVF GVFFIPESPRWLAKVGRDKELEETLKYLRGKGSDVSQEALDIKEHTKFFESLSGNGILDLFQLKYANALVVVSGLMVLQEFGGTNAFGYYAASICEMAGT FFIFSGVWVLGVMFITKFVPETKGKTLEELQTSITHVLSAKEEG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G04750			Major facilitator superfamily ...		Lus10029965 [exp]	0	1
AT1G54730			Major facilitator superfamily ...		Lus10029971 [exp]	1.0	0.8882
AT5G43830			Aluminium induced protein with...		Lus10041181 [exp]	4.4	0.8290
AT4G28030			Acyl-CoA N-acyltransferases (N...		Lus10015504 [exp]	10.2	0.8602
AT1G68090		ANN5, ANNAT5	ANNEXIN ARABIDOPSIS THALIANA 5...		Lus10023530 [exp]	11.7	0.8309
AT1G49380			cytochrome c biogenesis protei...		Lus10011311 [exp]	16.6	0.8689
AT5G04900		NOL	NYC1-like (.1)		Lus10034874 [exp]	21.2	0.8324
AT1G54780		AtTLP18.3, TLP1...	thylakoid lumen protein 18.3, ...		Lus10035346 [exp]	25.1	0.8642
AT3G10050		OMR1	L-O-methylthreonine resistant ...		Lus10020520 [exp]	25.7	0.7778
AT2G30390		FC2, FC-II, ATF...	ferrochelatase 2 (.1.2)		Lus10019224 [exp]	26.7	0.8464
AT2G24060			Translation initiation factor ...		Lus10035814 [exp]	30.1	0.8448

Compare expression of checked genes

Lus10029965 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.