Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54730 489 / 3e-170 Major facilitator superfamily protein (.1.2.3) AT2G48020 433 / 2e-148 Major facilitator superfamily protein (.1.2) AT5G18840 414 / 1e-140 Major facilitator superfamily protein (.1) AT1G08930 383 / 3e-128 ERD6 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) AT3G05150 378 / 7e-127 Major facilitator superfamily protein (.1) AT3G20460 374 / 4e-125 Major facilitator superfamily protein (.1) AT5G27350 367 / 3e-122 SFP1 Major facilitator superfamily protein (.1) AT3G05165 363 / 7e-121 Major facilitator superfamily protein (.1.2.3.4.5) AT1G08900 361 / 3e-120 Major facilitator superfamily protein (.1.2.3) AT5G27360 358 / 5e-119 SFP2 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035354 [exp] 705 / 0 AT1G54730 615 / 0.0 Major facilitator superfamily protein (.1.2.3) Lus10008183 [exp] 421 / 3e-143 AT2G48020 657 / 0.0 Major facilitator superfamily protein (.1.2) Lus10029629 [exp] 414 / 1e-140 AT2G48020 661 / 0.0 Major facilitator superfamily protein (.1.2) Lus10012780 [exp] 412 / 1e-139 AT5G18840 685 / 0.0 Major facilitator superfamily protein (.1) Lus10027975 [exp] 413 / 1e-136 AT2G48020 626 / 0.0 Major facilitator superfamily protein (.1.2) Lus10008179 [exp] 400 / 5e-136 AT2G48020 590 / 0.0 Major facilitator superfamily protein (.1.2) Lus10008184 [exp] 386 / 5e-130 AT2G48020 593 / 0.0 Major facilitator superfamily protein (.1.2) Lus10033812 [exp] 377 / 5e-126 AT1G08930 499 / 1e-174 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) Lus10033814 [exp] 372 / 3e-124 AT1G08920 466 / 8e-162 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G027500 [exp] 601 / 0 AT1G54730 606 / 0.0 Major facilitator superfamily protein (.1.2.3) Potri.002G212900 [exp] 431 / 5e-147 AT2G48020 723 / 0.0 Major facilitator superfamily protein (.1.2) Potri.005G039900 [exp] 419 / 1e-142 AT1G08920 461 / 1e-159 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) Potri.005G037000 [exp] 411 / 2e-139 AT1G08920 483 / 3e-168 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) Potri.013G027700 [exp] 408 / 2e-138 AT1G08930 483 / 6e-168 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) Potri.005G040000 [exp] 395 / 3e-133 AT1G54730 429 / 2e-147 Major facilitator superfamily protein (.1.2.3) Potri.013G027800 [exp] 365 / 1e-121 AT5G27360 405 / 6e-138 Major facilitator superfamily protein (.1) Potri.014G136600 [exp] 347 / 1e-114 AT2G48020 665 / 0.0 Major facilitator superfamily protein (.1.2) Potri.010G026500 [exp] 318 / 2e-103 AT5G18840 686 / 0.0 Major facilitator superfamily protein (.1) Potri.007G024300 [exp] 262 / 1e-81 AT1G75220 702 / 0.0 ERD6-like 6, Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10029966 pacid=23159671 polypeptide=Lus10029966 locus=Lus10029966.g ID=Lus10029966.BGIv1.0 annot-version=v1.0 ATGGAAGAAGCAGAGATTTCAACCTCTTTGATTGAGAAACAAAGGCCTCAGCTCCAATCCAGGGGTGGAGAAGAAGGCCAGAATGGTTCTTCTTCTTCTT CATCTGCTTCAAGCATACTTATTCTGAGCACCATGGTAGCTGTCTCAGGTTCCTATGTTTTTGGAACAGCTATTGGTTACTCATCACCTACTCAGTTAGG AATCATGGATGAACTTTCCCTCTCTGTAGCTGAGTACTCTCTATTTGGTTCAATACTCACAATTGGAGCAATGATAGGTGCTGTAATGAGTGGGAGAATA GCTGATTACATTGGTAGAAGAGGTTTGATGGCATTTTCAGAAGCTTTCTGCATCTTAGGTTGGCTAGCAATAGCATTTGCCAAGGTTACTTGGTGGCTTG ATGCTGGAAGGCTACTTGTAGGGTATGGGATGGGACTGCTTTCATATGTAGTTCCTGTGTTCATAGCTGAGATCACTCCGAAGAATCTTCGAGGAGGGTT CACCACAGTTCACCAGCTGATGATTTGCCTTGGTGTGTCCTTCACTTATCTGATCGGTTCCTTCGTCTCGTGGCGAGCCCTAGCTCTCATAGGAACTGTT CCATGCATTATCCAACTCTTGGGACTGTTCTTCATCCCTGAATCTCCTAGATGGTTGGCAAAAGTTGGCAGAGGGAAAGAATGTGAATCTGTTCTACAGA AGCTGAGAGGGAAGGAATCTGACATTTCTGATGAAGCAGCTGAAATAAGAGAATATACTGAGACGGTTCAGAGGCTTACTGAAGGCACCAGCATGTTTGA GTTGTTCCAATGGAAATATGCTCATTCTCTCCTTGTTGGAGTTGGGTTGATGGTGCTTCAGCAATTTGGAGGTGTTAATGCCATAGCGTTCTACGCAAGT TCGATATTTGTATCAGCCGGATTCTCTGGTAGTATTGGAACAATTGCAATGGTTATTGTTCAGGTTTCTGCAGCAGGAACTTGCTTGGGTTGCTTCCTTG TAACACTCTCATTTCTGCTTCAGGATCTCCAAGTTTTGCAACACATCTCTCCGTTTTTCGCCCTTTTCGGTGTCCTGGTAAACCCTGAAATTCCCACATG TCTCGTTGACCGCCTGGTTTGGCAAGTGGACTGTTGGGAGGAAATAAGACGAGAAAATACTCAAAATTCCATCCAACTTTCCATCAGTCAAATTAAGCGA TATATAGCCTCACTTTTCCATTTCCGAGCTGACTGGCTGCAAACACAGATGTTTACAGGCTCATTTTCACTAGGCATGGGAGGGATACCATGGGTCATAA TGTCTGAGGTTTTCCCAATAAACATGAAGGGAACAGCAGGGAGCCTAGTGACATTGGTCAGCTGGTTAGGGTCTTGGATTGTTTCCTATGCTTTCAACTT CATGATGGGTTGGAGCTCTCCAGGAACATTCTTGATATTCTCATGCATTGGTGGGGTGACGGTTGTTTTTGTGACGAAGTTGGTCCCTGAGACCAAAGGA AGAACACTCGAGGAAATTCAGGCTTCCTTGAACCCTTTTTCTGGAGATAGATAG
AA sequence Show only first row Show all	>Lus10029966 pacid=23159671 polypeptide=Lus10029966 locus=Lus10029966.g ID=Lus10029966.BGIv1.0 annot-version=v1.0 MEEAEISTSLIEKQRPQLQSRGGEEGQNGSSSSSSASSILILSTMVAVSGSYVFGTAIGYSSPTQLGIMDELSLSVAEYSLFGSILTIGAMIGAVMSGRI ADYIGRRGLMAFSEAFCILGWLAIAFAKVTWWLDAGRLLVGYGMGLLSYVVPVFIAEITPKNLRGGFTTVHQLMICLGVSFTYLIGSFVSWRALALIGTV PCIIQLLGLFFIPESPRWLAKVGRGKECESVLQKLRGKESDISDEAAEIREYTETVQRLTEGTSMFELFQWKYAHSLLVGVGLMVLQQFGGVNAIAFYAS SIFVSAGFSGSIGTIAMVIVQVSAAGTCLGCFLVTLSFLLQDLQVLQHISPFFALFGVLVNPEIPTCLVDRLVWQVDCWEEIRRENTQNSIQLSISQIKR YIASLFHFRADWLQTQMFTGSFSLGMGGIPWVIMSEVFPINMKGTAGSLVTLVSWLGSWIVSYAFNFMMGWSSPGTFLIFSCIGGVTVVFVTKLVPETKG RTLEEIQASLNPFSGDR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G54730			Major facilitator superfamily ...		Lus10029966 [exp]	0	1
AT1G54730			Major facilitator superfamily ...		Lus10035354 [exp]	1.0	0.9556
AT5G11330			FAD/NAD(P)-binding oxidoreduct...		Lus10013122 [exp]	1.4	0.9383
AT3G24200			FAD/NAD(P)-binding oxidoreduct...		Lus10011740 [exp]	2.4	0.9274
AT4G27120			unknown protein		Lus10011161 [exp]	4.2	0.9337
AT2G16720	MYB	AtY49, AtMYB7	ARABIDOPSIS THALIANA MYB DOMAI...		Lus10028435 [exp]	4.6	0.9242
AT1G14740			Protein of unknown function (D...		Lus10030769 [exp]	6.7	0.9294
					Lus10007298 [exp]	8.8	0.8858
AT1G61560		ATMLO6, MLO6	MILDEW RESISTANCE LOCUS O 6, S...		Lus10012410 [exp]	8.8	0.8999
AT1G30140			unknown protein		Lus10024751 [exp]	9.4	0.9335
AT5G14100		ABCI11, ATNAP14	ARABIDOPSIS THALIANANON-INTRIN...		Lus10032025 [exp]	11.8	0.8717

Compare expression of checked genes

Lus10029966 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.