Plant FIBer expression Database

Lus10029968 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G48060 241 / 1e-73 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035352
[exp]
367 / 1e-121 AT2G48060 720 / 0.0 unknown protein
Lus10008175
[exp]
272 / 2e-84 AT2G48060 1855 / 0.0 unknown protein
Lus10027981
[exp]
161 / 7e-51 AT2G48060 239 / 1e-73 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G037700
[exp]
291 / 3e-91 AT2G48060 2623 / 0.0 unknown protein
Potri.014G137200
[exp]
270 / 9e-84 AT2G48060 3339 / 0.0 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF12166 Piezo_RRas_bdg Piezo non-specific cation channel, R-Ras-binding domain
Representative CDS sequence
>Lus10029968 pacid=23159661 polypeptide=Lus10029968 locus=Lus10029968.g ID=Lus10029968.BGIv1.0 annot-version=v1.0
ATGGACATCATATTCTCCTGGCAATTGACAAGAGATAGACCTAGAGGTAAAGAAGCCGTTAAGTACGAGTTGGTTGTCCAAGACGAAGATCTTCCATCCT
ACTCTGACGTAATAAAAGTGCTCAATGGTACTGCCAATAGCTTCAGCATATACAATCTGTATCCTAGATACTTCCGAGTCACTGGATCCGGAGACGTGAG
GTCACTCGAACAGACGGTAGACATGGTGAGCGGAGATCTTGTGCTGAACCAAGGGAATTCGGATTGGTGGTCATTCCACGACACAAGTGCATCAACATCA
GGATGCGGGATGTCGACTGGGCCTATGGCTGTAATCATATCAGAGGAAACACCTCAGGGAATCATAGGTGAAACACTGAGCAAGTTCAGCATCTGGGGAC
TTTACATCACGTTCGTGCTAGCTGTTGGCCGATTGTTGGCGACACGTGAGAACATTTACGCAGCAAGAGCAGAAGGCGAGCTTGAAGTAGAAGAGGTGCT
TTACTGGACACTAGTGAAGATTTTCCGGACGCCACACATGTTGCTTGAGTACACCAACCCTGACTAA
AA sequence
>Lus10029968 pacid=23159661 polypeptide=Lus10029968 locus=Lus10029968.g ID=Lus10029968.BGIv1.0 annot-version=v1.0
MDIIFSWQLTRDRPRGKEAVKYELVVQDEDLPSYSDVIKVLNGTANSFSIYNLYPRYFRVTGSGDVRSLEQTVDMVSGDLVLNQGNSDWWSFHDTSASTS
GCGMSTGPMAVIISEETPQGIIGETLSKFSIWGLYITFVLAVGRLLATRENIYAARAEGELEVEEVLYWTLVKIFRTPHMLLEYTNPD

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G48060 unknown protein Lus10029968
[exp]
0 1
AT2G47140 AtSDR5 short-chain dehydrogenase redu... Lus10022760
[exp]
3.9 0.8525
Lus10024490
[exp]
4.7 0.8331
AT4G15550 IAGLU indole-3-acetate beta-D-glucos... Lus10027584
[exp]
6.7 0.8185
Lus10029087
[exp]
11.5 0.8175
AT5G16460 Putative adipose-regulatory pr... Lus10020213
[exp]
14.8 0.6503
AT5G40960 Protein of unknown function (D... Lus10032031
[exp]
15.1 0.7492
AT5G06060 NAD(P)-binding Rossmann-fold s... Lus10016495
[exp]
15.5 0.7811
AT4G37870 PCK1, PEPCK phosphoenolpyruvate carboxykin... Lus10011582
[exp]
19.3 0.7616
AT3G49190 O-acyltransferase (WSD1-like) ... Lus10017717
[exp]
22.2 0.7254
AT3G18590 AtENODL5 early nodulin-like protein 5 (... Lus10009617
[exp]
28.1 0.8024

Lus10029968 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.