Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54730 115 / 4e-31 Major facilitator superfamily protein (.1.2.3) AT3G05400 106 / 6e-27 Major facilitator superfamily protein (.1.2) AT2G48020 106 / 6e-27 Major facilitator superfamily protein (.1.2) AT1G08930 103 / 7e-26 ERD6 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) AT3G05155 99 / 1e-24 Major facilitator superfamily protein (.1) AT3G05165 97 / 1e-23 Major facilitator superfamily protein (.1.2.3.4.5) AT5G27350 94 / 2e-22 SFP1 Major facilitator superfamily protein (.1) AT3G05160 93 / 2e-22 Major facilitator superfamily protein (.1.2) AT5G27360 93 / 5e-22 SFP2 Major facilitator superfamily protein (.1) AT4G04760 92 / 8e-22 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029966 [exp] 211 / 5e-66 AT1G54730 525 / 0.0 Major facilitator superfamily protein (.1.2.3) Lus10035354 [exp] 194 / 7e-60 AT1G54730 615 / 0.0 Major facilitator superfamily protein (.1.2.3) Lus10033812 [exp] 106 / 8e-27 AT1G08930 499 / 1e-174 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) Lus10029965 [exp] 100 / 4e-25 AT4G04750 283 / 2e-92 Major facilitator superfamily protein (.1) Lus10029964 [exp] 100 / 1e-24 AT1G54730 419 / 2e-142 Major facilitator superfamily protein (.1.2.3) Lus10008183 [exp] 99 / 4e-24 AT2G48020 657 / 0.0 Major facilitator superfamily protein (.1.2) Lus10027976 [exp] 96 / 4e-23 AT2G48020 598 / 0.0 Major facilitator superfamily protein (.1.2) Lus10012780 [exp] 96 / 6e-23 AT5G18840 685 / 0.0 Major facilitator superfamily protein (.1) Lus10027975 [exp] 96 / 8e-23 AT2G48020 626 / 0.0 Major facilitator superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G027500 [exp] 159 / 1e-46 AT1G54730 606 / 0.0 Major facilitator superfamily protein (.1.2.3) Potri.005G037000 [exp] 117 / 9e-31 AT1G08920 483 / 3e-168 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) Potri.013G027700 [exp] 112 / 3e-29 AT1G08930 483 / 6e-168 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) Potri.005G039900 [exp] 108 / 9e-28 AT1G08920 461 / 1e-159 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) Potri.014G136600 [exp] 101 / 3e-25 AT2G48020 665 / 0.0 Major facilitator superfamily protein (.1.2) Potri.005G040000 [exp] 101 / 5e-25 AT1G54730 429 / 2e-147 Major facilitator superfamily protein (.1.2.3) Potri.010G026500 [exp] 99 / 3e-24 AT5G18840 686 / 0.0 Major facilitator superfamily protein (.1) Potri.002G212900 [exp] 99 / 4e-24 AT2G48020 723 / 0.0 Major facilitator superfamily protein (.1.2) Potri.013G027800 [exp] 94 / 3e-22 AT5G27360 405 / 6e-138 Major facilitator superfamily protein (.1) Potri.002G259900 [exp] 79 / 5e-17 AT1G75220 744 / 0.0 ERD6-like 6, Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10029970 pacid=23159800 polypeptide=Lus10029970 locus=Lus10029970.g ID=Lus10029970.BGIv1.0 annot-version=v1.0 ATGGAAGAAGCAGAGATCTCAACCTCTTTGATTGAGAAACAAAGGCCTCAGCTCCAATCCAGGGGTGGAGAAGAAGACCAGAATGGTTCTTCTTCTTCTT CTTCAGCTGCTTCAAGCATACTTATTTTGAGCACCATGGTAGCTGTCTCAGGTTGGCTAGCAATAGCATTTGCAAAGGTTACGTGGTGGCTTCATGCTGG AAGGCTGCTTGTAGGATACGGGATGGGACTGCTTTCATATGTGGTTCCTGTGTTCATTGCCGAGATCACTCCGAAGAATCTTCGAGGAGGGTTCACCACA GTTCACCAGGCAAAAGTTGGCAGAGGGAAAGAATGTGAATCTGTTCTACAGAAGCTGAGAGGGAAGGAATCTTATATTTCAGATGAAGCAGCTGAAATAA GAGATTGTACTGAGACAGTTCAGAAGCATACTGAAGGCACCAACATGTTTGAGTTGTTCCAATGGAAATATGCTCATTCTCTCCTTGTTACTGCAGCAGG AACTTGCTTGGGTTGCTTCCTTGTAGCACTCTCATTTCTGCTTCAGGTTTTCCCAATAAACATGAAGGGAACAGCAGGGAGCCTAGTGACATTGGTCAGC TAG
AA sequence Show only first row Show all	>Lus10029970 pacid=23159800 polypeptide=Lus10029970 locus=Lus10029970.g ID=Lus10029970.BGIv1.0 annot-version=v1.0 MEEAEISTSLIEKQRPQLQSRGGEEDQNGSSSSSSAASSILILSTMVAVSGWLAIAFAKVTWWLHAGRLLVGYGMGLLSYVVPVFIAEITPKNLRGGFTT VHQAKVGRGKECESVLQKLRGKESYISDEAAEIRDCTETVQKHTEGTNMFELFQWKYAHSLLVTAAGTCLGCFLVALSFLLQVFPINMKGTAGSLVTLVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05400			Major facilitator superfamily ...		Lus10029970 [exp]	0	1
AT4G37020			unknown protein		Lus10000435 [exp]	2.8	0.8640
AT5G13700		ATPAO1, APAO	polyamine oxidase 1 (.1)		Lus10041898 [exp]	2.8	0.8500
AT5G57910			unknown protein		Lus10036255 [exp]	8.8	0.8338
AT3G25060			Tetratricopeptide repeat (TPR)...		Lus10038187 [exp]	9.2	0.8249
AT1G63460		ATGPX8	glutathione peroxidase 8 (.1)		Lus10000601 [exp]	13.0	0.8327
AT2G27790			RNA-binding (RRM/RBD/RNP motif...		Lus10030600 [exp]	15.5	0.8493
AT1G76200			unknown protein		Lus10012279 [exp]	15.9	0.8293
					Lus10043057 [exp]	16.1	0.8215
AT1G07745		SSN1, ATRAD51D,...	SUPPRESOR OF SNI1, homolog of ...		Lus10005437 [exp]	19.6	0.8425
AT2G04520			Nucleic acid-binding, OB-fold-...		Lus10000920 [exp]	20.6	0.8355

Compare expression of checked genes

Lus10029970 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.