Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54730 171 / 1e-49 Major facilitator superfamily protein (.1.2.3) AT2G48020 140 / 4e-38 Major facilitator superfamily protein (.1.2) AT5G27350 140 / 7e-38 SFP1 Major facilitator superfamily protein (.1) AT1G08920 139 / 2e-37 ESL1 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) AT1G08900 138 / 4e-37 Major facilitator superfamily protein (.1.2.3) AT1G08930 137 / 2e-36 ERD6 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) AT5G27360 136 / 2e-36 SFP2 Major facilitator superfamily protein (.1) AT3G05165 132 / 1e-34 Major facilitator superfamily protein (.1.2.3.4.5) AT3G05160 130 / 1e-34 Major facilitator superfamily protein (.1.2) AT5G18840 130 / 5e-34 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029960 [exp] 206 / 6e-62 AT1G54730 490 / 3e-170 Major facilitator superfamily protein (.1.2.3) Lus10029962 [exp] 180 / 3e-52 AT1G54730 451 / 2e-155 Major facilitator superfamily protein (.1.2.3) Lus10029961 [exp] 182 / 7e-52 AT1G54730 429 / 3e-144 Major facilitator superfamily protein (.1.2.3) Lus10029964 [exp] 171 / 8e-49 AT1G54730 419 / 2e-142 Major facilitator superfamily protein (.1.2.3) Lus10035354 [exp] 160 / 3e-45 AT1G54730 615 / 0.0 Major facilitator superfamily protein (.1.2.3) Lus10035356 [exp] 156 / 2e-43 AT1G54730 430 / 2e-147 Major facilitator superfamily protein (.1.2.3) Lus10033812 [exp] 152 / 4e-42 AT1G08930 499 / 1e-174 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) Lus10012780 [exp] 147 / 3e-40 AT5G18840 685 / 0.0 Major facilitator superfamily protein (.1) Lus10029629 [exp] 145 / 1e-39 AT2G48020 661 / 0.0 Major facilitator superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G039900 [exp] 182 / 1e-53 AT1G08920 461 / 1e-159 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) Potri.013G027500 [exp] 181 / 6e-53 AT1G54730 606 / 0.0 Major facilitator superfamily protein (.1.2.3) Potri.005G037000 [exp] 174 / 2e-50 AT1G08920 483 / 3e-168 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) Potri.013G027700 [exp] 173 / 5e-50 AT1G08930 483 / 6e-168 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) Potri.005G040000 [exp] 157 / 4e-44 AT1G54730 429 / 2e-147 Major facilitator superfamily protein (.1.2.3) Potri.013G027800 [exp] 154 / 6e-43 AT5G27360 405 / 6e-138 Major facilitator superfamily protein (.1) Potri.010G026500 [exp] 148 / 9e-41 AT5G18840 686 / 0.0 Major facilitator superfamily protein (.1) Potri.005G037300 [exp] 132 / 7e-38 AT1G08930 143 / 3e-41 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) Potri.002G212900 [exp] 138 / 7e-37 AT2G48020 723 / 0.0 Major facilitator superfamily protein (.1.2) Potri.014G136600 [exp] 131 / 2e-34 AT2G48020 665 / 0.0 Major facilitator superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10029971 pacid=23159736 polypeptide=Lus10029971 locus=Lus10029971.g ID=Lus10029971.BGIv1.0 annot-version=v1.0 ATGGGGCAGTTAGCCTACGAGGAGGAGGAAGTAGAGCTGGAAACTGGGCTTCTACTACAGCCCAATGCGGACGACGTCTTATCGCTCACCCCTGCCGTCG CCGTTACTGCTTTGGTCGCCGTCTTCGGCTCCATGGCCACCGGTTGTGCTTATGGATACTCATCACCAGCAGAGTCAGGAATCATGGCAGAAATCGGAAT GTCTGTAGCACAATACTCTACCTTTGGATCAATCATGACAATTGGAGGAATGCTGGGCTCTTTAGTCAATGGCAAGATGGCTGATCTCATTGGCAGGAGA TATGAACATACTAAGTTCTTTGAAAGCCTTTCGGGGAACGGGATTCTCGACTTGTTCCAGCTGAAATACGCGAACGCACTGGTTGTCGTGTCGGGACTGA TGGTGCTTCAGGAGTTTGGAGGGACCAATGCATTTGGATACTATGCTGCTTCTATATGTGAAATGGCTGATTTATGGTTTCTGCAGATTCCAGCTACTAT AACATCTGTGCTCCTAACTGATAAGCTCGGAAGGCGTCCACTTCTTCTGATATCATCATTGGGATTGTTATTCTGTACCTTCTTGCTTGGACTTTCATTC ATGTTTCAGGAACTTCACAGCTCAGGAACTGTTACTGCACTATTGGCATACTTTGGCTTGCTGGGACTCCCCATAAGCTTTTCACTAGGAATGGCAGGGC TACCAGGAGTTGTAATGGCTGAGGTGTTTCCTATAAACATCAAAGGAACTGCTGGAAGTCTAGTGACATTTCTCAACTGGTCATCTTCTTGGATTGTCAC ATATTCTTTCAACTTTATTGTGCTGTGGAATGCAGCAGGTACATTCTTCATCTTCTCAGGGGTATGGGTATTAGGAGTTATGTTCATCGTAAAGTTTATC CCAGAGACTAAAGGGAAGACACTTGAAGAACTGCAGACTTCTATAACTCATGTTCTACCGACAAAAGAAGAAGGTTGA
AA sequence Show only first row Show all	>Lus10029971 pacid=23159736 polypeptide=Lus10029971 locus=Lus10029971.g ID=Lus10029971.BGIv1.0 annot-version=v1.0 MGQLAYEEEEVELETGLLLQPNADDVLSLTPAVAVTALVAVFGSMATGCAYGYSSPAESGIMAEIGMSVAQYSTFGSIMTIGGMLGSLVNGKMADLIGRR YEHTKFFESLSGNGILDLFQLKYANALVVVSGLMVLQEFGGTNAFGYYAASICEMADLWFLQIPATITSVLLTDKLGRRPLLLISSLGLLFCTFLLGLSF MFQELHSSGTVTALLAYFGLLGLPISFSLGMAGLPGVVMAEVFPINIKGTAGSLVTFLNWSSSWIVTYSFNFIVLWNAAGTFFIFSGVWVLGVMFIVKFI PETKGKTLEELQTSITHVLPTKEEG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G54730			Major facilitator superfamily ...		Lus10029971 [exp]	0	1
AT4G04750			Major facilitator superfamily ...		Lus10029965 [exp]	1.0	0.8882
AT4G01995			unknown protein		Lus10016264 [exp]	4.5	0.8227
AT4G28600		NPGR2	no pollen germination related ...		Lus10011793 [exp]	4.6	0.8260
AT5G59610			Chaperone DnaJ-domain superfam...		Lus10040777 [exp]	8.0	0.8360
AT3G10050		OMR1	L-O-methylthreonine resistant ...		Lus10020520 [exp]	9.5	0.7752
AT2G26600			Glycosyl hydrolase superfamily...		Lus10038099 [exp]	13.3	0.7714
AT2G36410			Family of unknown function (DU...		Lus10023876 [exp]	13.4	0.8097
AT2G22420			Peroxidase superfamily protein...		Lus10025737 [exp]	17.0	0.7696
AT5G04900		NOL	NYC1-like (.1)		Lus10034874 [exp]	17.9	0.8101
AT1G75170			Sec14p-like phosphatidylinosit...		Lus10025128 [exp]	19.7	0.7821

Compare expression of checked genes

Lus10029971 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.