Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G48060 421 / 2e-130 unknown protein AT1G54730 71 / 3e-13 Major facilitator superfamily protein (.1.2.3) AT3G05165 71 / 1e-12 Major facilitator superfamily protein (.1.2.3.4.5) AT2G48020 69 / 5e-12 Major facilitator superfamily protein (.1.2) AT3G05160 68 / 9e-12 Major facilitator superfamily protein (.1.2) AT3G05155 66 / 1e-11 Major facilitator superfamily protein (.1) AT5G27350 67 / 2e-11 SFP1 Major facilitator superfamily protein (.1) AT5G27360 66 / 3e-11 SFP2 Major facilitator superfamily protein (.1) AT1G08930 65 / 9e-11 ERD6 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) AT3G05400 63 / 3e-10 Major facilitator superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035352 [exp] 1086 / 0 AT2G48060 720 / 0.0 unknown protein Lus10000212 [exp] 457 / 8e-150 AT2G48060 1077 / 0.0 unknown protein Lus10027982 [exp] 423 / 5e-131 AT2G48060 1580 / 0.0 unknown protein Lus10008175 [exp] 248 / 1e-70 AT2G48060 1855 / 0.0 unknown protein Lus10029963 [exp] 114 / 3e-27 AT1G54730 322 / 9e-107 Major facilitator superfamily protein (.1.2.3) Lus10029961 [exp] 109 / 9e-25 AT1G54730 429 / 3e-144 Major facilitator superfamily protein (.1.2.3) Lus10029962 [exp] 108 / 1e-24 AT1G54730 451 / 2e-155 Major facilitator superfamily protein (.1.2.3) Lus10035354 [exp] 75 / 7e-14 AT1G54730 615 / 0.0 Major facilitator superfamily protein (.1.2.3) Lus10029966 [exp] 74 / 9e-14 AT1G54730 525 / 0.0 Major facilitator superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G037700 [exp] 525 / 7e-167 AT2G48060 2623 / 0.0 unknown protein Potri.014G137200 [exp] 424 / 2e-131 AT2G48060 3339 / 0.0 unknown protein Potri.013G027500 [exp] 72 / 3e-13 AT1G54730 606 / 0.0 Major facilitator superfamily protein (.1.2.3) Potri.002G212900 [exp] 71 / 1e-12 AT2G48020 723 / 0.0 Major facilitator superfamily protein (.1.2) Potri.013G027700 [exp] 68 / 6e-12 AT1G08930 483 / 6e-168 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) Potri.005G037000 [exp] 68 / 1e-11 AT1G08920 483 / 3e-168 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) Potri.005G039900 [exp] 67 / 1e-11 AT1G08920 461 / 1e-159 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) Potri.014G136600 [exp] 65 / 6e-11 AT2G48020 665 / 0.0 Major facilitator superfamily protein (.1.2) Potri.005G040000 [exp] 65 / 8e-11 AT1G54730 429 / 2e-147 Major facilitator superfamily protein (.1.2.3) Potri.010G026500 [exp] 64 / 1e-10 AT5G18840 686 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10029972 pacid=23159706 polypeptide=Lus10029972 locus=Lus10029972.g ID=Lus10029972.BGIv1.0 annot-version=v1.0 ATGTTGCCTGGACAAAAATGTTACGGTTTGTCCCTCTTTCTTGGATTGCGGGTTTACGAACCTTCTTTTGCAAGTTTGGAGTCAGGCCTGAGGGGAAAAG TTTTAGTCATTGTCTCGTGCTTACTTAGATACAATGTTTTCCATTGGTTACGGAAAAAATCATCCAAGTTCCAGAAAGCAAGAAAGTGGGACGAGTCTTG CGAGTTGTTTAGTTCATTTGATGAGACACAATACACGACGAGAAGTCCAGGCAAGGAAACCGAAACTTCTGACCTTTCCAGACCCTTGTTAGAGAAACCA GAAGACGAAGCAGGAGTTCATTCTTGGACATCGTTCATTACCGAGCTTTCGAATTGGCATGAGCTTGGAGAGGATCCGAATGAGTGTGAAGATTTCAAAG AGAGGCCTAAGTTGACTCGGAAACCGATCCATATGTTGAGAAACGAAAGGTTGAGAAAGCAGATAAGAACTCTGAAGGTGTACGTGAAGTTTTTGATAGA GAATATCTTCAATCTGTTTGGCCTCGAGATCAATATGATCACGTTATGTATCGCTAGCTTTGCAGTTCTGAATACAATCTCATTGCTCTATGATGCATCA CTTGCTGCTTTCATTCTGTTACCTTGCCATTTGACGAAGAAGCTTTGGCCGATGTTCATGTTCCTATTTGGCTCAGTCATCACCCTTGAGTACCTTGCCA TTTGGCTGTTTCGATTCGGGCAGCAACATAACCCCAGTGGTAGTAGTACACAAGTTCCTTGCAATAACTCTTGGGAGAGGTCTGATATCTTCTTGTATCA CTGCCAAAAGTGCTGGCTAGGACTCATAGTTGATGATCCATGCATTCTTGTAAGCTATTATGTAGTCTTCTTGCTTGCGTGTTTCAAGTTCCGCGCTGAT CGTATGTCAAGCCAGACAGTATCGGATACCTACCAGCAAATGATATGCCAGTACAAGAGTTCCTCACTTAACGATCTCTCATTCAAAACGAGATACAAGT GGACGGTATTTGATTACCTTCGGCTTTATAGCTACTGCCACTTGCTAGATCTCGTCCTTGCTTTGATCCTGATCACCGGCACACTCGAATTCGACATTCT ACACCTAGGTTATCTTGGTCTCTCCCTGGTATTCTTCAGGATGAGGCTAGAAATGCTGAAAAACAAGAACCGGATATTCAAGTACTTGAGGATGTACAAT TTCGCCATAATCGTTCTTTCCTTGACCTATCAATCACCTTATGTGGGGACTTTCTGTGATGGAAAATGTGGGTTGATAGCCTACATCAGCGATGTCGTTG GCTTCTATAAGTATGATTACGGATTTCGGATCACTTCAAGATCAGCACTCGTGGAGATCATCATACACATTCTGGTTGCTGTGCCATCTGCATTGCACAT TTTGGGGTGGTTGTTCATCCCTGAATCACCAAGATGGCTGGACTCATTTCAGACATGCCAAGGTCAGAAATCGGACAAGGTTCTCGAGCTATTCCAGCTC AAATATGTTCATGATATCGTTGTTGGTGTTGGACTAATGATGTTCCAGCACTTTAGTGGGACTACTGCTATTACATACTATGCAATGTCCATATTCGAGG CAGCTGGTATCAGCCTCAGGGATGTGCGTGAGTTGCTTGCTTATAGGCGTGGCATTTGGCCTTCAGGGGTTTCATATAGCGAAGGAACTCACTCCAATCC TTGTTTGTGTCGGAATACTGGTAACAAGTCACACTAG
AA sequence Show only first row Show all	>Lus10029972 pacid=23159706 polypeptide=Lus10029972 locus=Lus10029972.g ID=Lus10029972.BGIv1.0 annot-version=v1.0 MLPGQKCYGLSLFLGLRVYEPSFASLESGLRGKVLVIVSCLLRYNVFHWLRKKSSKFQKARKWDESCELFSSFDETQYTTRSPGKETETSDLSRPLLEKP EDEAGVHSWTSFITELSNWHELGEDPNECEDFKERPKLTRKPIHMLRNERLRKQIRTLKVYVKFLIENIFNLFGLEINMITLCIASFAVLNTISLLYDAS LAAFILLPCHLTKKLWPMFMFLFGSVITLEYLAIWLFRFGQQHNPSGSSTQVPCNNSWERSDIFLYHCQKCWLGLIVDDPCILVSYYVVFLLACFKFRAD RMSSQTVSDTYQQMICQYKSSSLNDLSFKTRYKWTVFDYLRLYSYCHLLDLVLALILITGTLEFDILHLGYLGLSLVFFRMRLEMLKNKNRIFKYLRMYN FAIIVLSLTYQSPYVGTFCDGKCGLIAYISDVVGFYKYDYGFRITSRSALVEIIIHILVAVPSALHILGWLFIPESPRWLDSFQTCQGQKSDKVLELFQL KYVHDIVVGVGLMMFQHFSGTTAITYYAMSIFEAAGISLRDVRELLAYRRGIWPSGVSYSEGTHSNPCLCRNTGNKSH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G48060			unknown protein		Lus10029972 [exp]	0	1
AT2G47830			Cation efflux family protein (...		Lus10000033 [exp]	1.4	0.8389
AT3G10050		OMR1	L-O-methylthreonine resistant ...		Lus10020520 [exp]	2.2	0.8213
AT4G04720		CPK21	calcium-dependent protein kina...		Lus10020046 [exp]	3.5	0.8422
AT2G48060			unknown protein		Lus10029973 [exp]	4.2	0.8144
AT3G27730		MER3, RCK	ROCK-N-ROLLERS, ATP binding;AT...		Lus10014551 [exp]	5.7	0.8218
AT2G48060			unknown protein		Lus10035352 [exp]	6.0	0.7814
AT4G28600		NPGR2	no pollen germination related ...		Lus10023748 [exp]	6.2	0.8284
					Lus10033157 [exp]	10.1	0.7816
AT3G11590			unknown protein		Lus10021324 [exp]	11.0	0.8063
AT2G21180			unknown protein		Lus10026283 [exp]	12.2	0.7690

Compare expression of checked genes

Lus10029972 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.