Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G48060 586 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035351 [exp] 1138 / 0 AT2G48060 862 / 0.0 unknown protein Lus10027982 [exp] 526 / 2e-166 AT2G48060 1580 / 0.0 unknown protein Lus10008175 [exp] 362 / 3e-109 AT2G48060 1855 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G037700 [exp] 763 / 0 AT2G48060 2623 / 0.0 unknown protein Potri.014G137200 [exp] 679 / 0 AT2G48060 3339 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029973 pacid=23159680 polypeptide=Lus10029973 locus=Lus10029973.g ID=Lus10029973.BGIv1.0 annot-version=v1.0 ATGGGGATTCAGTACTCGTCCATTCTGCACATAGGTTCTCATCTTCGGGTTTTGTGCTGCTTACTGTTGCCGGTTGTACAGCTGATCGTCGGCATTAGCC ACCCTTCTTGGGCATCTTTACCATTTTTCATATTTAGCAGCATTGGACTTGTTAATTGGTCTCTAACAAGCAATTTCCTTGGTTTGTTTCGGTGGTGGAG CTATCTTTTGTTCTATGCAGGGCTGAACATTGTCCTGTTGTACATCTTTCAACTTCCTGTTCGGTTTCTGTGGATGCAATCTGCTGGAAGTTTCTTTGGT CTCTATAAAGTATCTTCATGCTCGGAGTGGTCTGAAATTTGTTCGGATTTCTCAGTTCTTCTCTTCTATATTATGCTATCTTGGATCAGATGTGACCTCG CAGAAATGGATTTTATAATGTCTGGTATAGAGAACAGCTTGACTATCTGGATTAAGGCATACAAACTTCTTGTTAAGAGGAGTAGTTTTCCGCACATTCT GTGTGAACTTTTCACTTACGGTTTCCCGATTTCCTTGCTTGCTTTGTCATTTTGGAGTTTCCATTTTGCAAGTTTCTGTGCATTTGCACTCCTGGCATAC GTTGGCTATGTGCTCTACGCCATCCCTTCGGTTTTTCGGTTGCACCGGCTAAATGGCTTGCTCCTTGTATTCATTCTGTTGTGGGCTGCTAGCACCTATG TCTTCAACTTGACATTTCTGATCCTCAATAAGCATAAGGACCTGGAAATCTGGGAAACTATTGGTTTATGGCATTATCCTATTCCTGGGTTCTATCTGTG TGCGCAATTTGGTCTCGGTATTCTGGTTGCTTTAGGCAATCTCGTTAATAACTCTGTTTTCCAGTACTTGTCTGATCCGGGTGTACAGTATTCGAAGCAT GATGCCAATGTAGAAGTGGTTTTCTTTATGATATATCTCCTGAGCCGTACCATAAGTAGGAAGATGCGCCAGTATCTGATCCTTCTGTGTGAAGCACATT TCGCGCTTACGTATTTTCTTCAACTTAACCTCATCTCAAATGCCTTGAAAGAGAAGGAAACGATAGCAACGGTTATCCTCAGAGAATTAGGTTTCCTCAG CAGCGCCGAATCTCGGGATTTCCTAAAGATGGGAACACTTGCATGCTTTTTTGCTCTTCATAACCATGGATTAGAAGTGCTGTCTGCATTTTCTGCCATT GTACAACATACTCCCTGCCCTCCGATCGGTTTTGGCATCTTAAGAGCCGGTCTGGTTAAGTCGATTCTCTTGTATGTGTATACATCAAGGTCCAAACAGA ACAGTGATAACAAATCTTCTCATGAAAAGGAGATAGCATCTTATCTGACAGCAATAGGGCAGAACTTTCGGTCAGTGTATCGATCATGCGGAACCTACAT TGCTCTTTTAACAGTTGTTCTTGCTGTCTACCGGGTTAGACCCAATCATACTTCATTCGGTTACCTGTTCTTCCTTATGGTCTGGATGGTTGCAAGGCAA CATGCAGGAAGGACGACGAGGCTGATGTGGTTACCGTTGAAAGTTTATGCCATCTTCGTGTTTATTCTACTTTACGGTTTGAGTGTTTTCTTCAGCTTTC GGAAATGGCTATCAAGGATAGTTGATGTCTCTTATGTCTTTGGATATGATCCCAAGGCTTCGATGCTGGAAAATATATGGGAATCTCTTGCTGTGTTGGC AGTGATGCAATTGTATACCTACGAGAGGCAAAGCAAACGTAAGGCCAATATTCCCGAAACAAGTTCCTTTTCTCTGATCAAGCGCCTTCTCATTTGGCAC GGGGAGAAAATACCGAACCTGTTGCTGTTTTATGCTTCGATATCCCCTATAAGTGGATTTGGTTTCCTCTTATCTCATCGGCATGGTTGCTTGTTCAACG TTACCCAAGTCGTCTTGGCTCCCATCCAAGTTGTCTGA
AA sequence Show only first row Show all	>Lus10029973 pacid=23159680 polypeptide=Lus10029973 locus=Lus10029973.g ID=Lus10029973.BGIv1.0 annot-version=v1.0 MGIQYSSILHIGSHLRVLCCLLLPVVQLIVGISHPSWASLPFFIFSSIGLVNWSLTSNFLGLFRWWSYLLFYAGLNIVLLYIFQLPVRFLWMQSAGSFFG LYKVSSCSEWSEICSDFSVLLFYIMLSWIRCDLAEMDFIMSGIENSLTIWIKAYKLLVKRSSFPHILCELFTYGFPISLLALSFWSFHFASFCAFALLAY VGYVLYAIPSVFRLHRLNGLLLVFILLWAASTYVFNLTFLILNKHKDLEIWETIGLWHYPIPGFYLCAQFGLGILVALGNLVNNSVFQYLSDPGVQYSKH DANVEVVFFMIYLLSRTISRKMRQYLILLCEAHFALTYFLQLNLISNALKEKETIATVILRELGFLSSAESRDFLKMGTLACFFALHNHGLEVLSAFSAI VQHTPCPPIGFGILRAGLVKSILLYVYTSRSKQNSDNKSSHEKEIASYLTAIGQNFRSVYRSCGTYIALLTVVLAVYRVRPNHTSFGYLFFLMVWMVARQ HAGRTTRLMWLPLKVYAIFVFILLYGLSVFFSFRKWLSRIVDVSYVFGYDPKASMLENIWESLAVLAVMQLYTYERQSKRKANIPETSSFSLIKRLLIWH GEKIPNLLLFYASISPISGFGFLLSHRHGCLFNVTQVVLAPIQVV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G48060			unknown protein		Lus10029973 [exp]	0	1
AT1G30280			Chaperone DnaJ-domain superfam...		Lus10036149 [exp]	2.2	0.8215
AT2G48060			unknown protein		Lus10029972 [exp]	4.2	0.8144
AT5G14370			CCT motif family protein (.1)		Lus10022311 [exp]	6.6	0.8148
AT2G48060			unknown protein		Lus10035351 [exp]	9.6	0.6948
AT3G11590			unknown protein		Lus10017001 [exp]	11.5	0.7963
					Lus10033157 [exp]	11.6	0.7691
AT2G25930		PYK20, ELF3	EARLY FLOWERING 3, hydroxyprol...		Lus10007459 [exp]	14.1	0.7403
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Lus10030454 [exp]	17.9	0.7697
AT5G16720			Protein of unknown function, D...		Lus10002289 [exp]	18.2	0.8006
AT1G10120	bHLH	bHLH074, CIB4	basic helix-loop-helix (bHLH) ...		Lus10006491 [exp]	20.0	0.7571

Compare expression of checked genes

Lus10029973 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.