Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05170 387 / 8e-136 Phosphoglycerate mutase family protein (.1) AT1G08940 355 / 5e-124 Phosphoglycerate mutase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031518 [exp] 464 / 9e-167 AT3G05170 423 / 3e-150 Phosphoglycerate mutase family protein (.1) Lus10015164 [exp] 461 / 2e-165 AT3G05170 421 / 2e-149 Phosphoglycerate mutase family protein (.1) Lus10035350 [exp] 432 / 6e-154 AT3G05170 317 / 1e-108 Phosphoglycerate mutase family protein (.1) Lus10024659 [exp] 221 / 1e-71 AT3G05170 241 / 2e-79 Phosphoglycerate mutase family protein (.1) Lus10032291 [exp] 221 / 1e-71 AT3G05170 241 / 2e-79 Phosphoglycerate mutase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G037900 [exp] 411 / 1e-145 AT3G05170 441 / 2e-157 Phosphoglycerate mutase family protein (.1) Potri.003G131200 [exp] 267 / 2e-88 AT3G05170 283 / 1e-94 Phosphoglycerate mutase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0071 [flax] [poplar] His_phosphatase PF00300 [flax] [poplar] His_Phos_1 Histidine phosphatase superfamily (branch 1)
Representative CDS sequence Show only first row Show all	>Lus10029974 pacid=23159886 polypeptide=Lus10029974 locus=Lus10029974.g ID=Lus10029974.BGIv1.0 annot-version=v1.0 ATGGCGGATCCGGATCCTAATGGCCGCCGCAATCACAGTCTACCGAAGCGGATAATCCTGGTCCGGCACGGCGAGTCACAGGGGAACCTTGACACGGCGG CGTACACCCACATACCCGACCACAAAATCCCGCTTACTGAATCGGGCAAGGCTCAGGCGAGGGAGGCGGGCGCCAAATTGCACTCTTTGTTTTCATTCCC TGACTGCGGCAACTCGTCGAACACTTGGAGGGCGTACTTCTACGTCTCACCTTACGACCGGACTCGGTCCACGCTTAGGGAGATCGGGACGGCGTTCGAT AGGAAGATGATTATCGGGGTTAGGGAGGAGTGTAGGGTGAGGGAGCAGGATTTCGGGAACTTCCAGGTGGAAGAGAGGATGAAGGTGGTTAAAGAGTCGA GGGCCAGGTTTGGGAGGTTCTTCTTCCGGTTCCCTGATGGCGAATCTGCTGCTGATGTCTTCGATCGCGTTTCCAATTTTCTTGAATCTCTATGGAGGGA CATAGAAATGAACAGGCTACACCATGACCCCTCACACGATCTAAACATCATAATTGTAACTCATGGGTTAACCTGTCGTGTATTCCTAATGAAGTGGTTC AAGTGGACAGTCGAGCAGTTCGAGCTGCTGAGCAACCCGGAAAACTGCGAGTTTCGTGTGATGCAGTTGGGGTCCGGTGGAGAATATAGCTTGGCAGTCC ACCACAGTGAAGAAGAACTCCGAGAATGGGGGCTTTCGGAAGCCATGATTGCAGACCAGAAGTGGCGAGCCACAGCCAACAAGGGCGATTGGAACGACAG CTGCCCGTGGGTTCTCGATGAATTCTTCGATCCTCCACATGGATCAAGTGAAGATAACGATGAAGACGAATCTAAAAATGTATTTGTGTGTACATAA
AA sequence Show only first row Show all	>Lus10029974 pacid=23159886 polypeptide=Lus10029974 locus=Lus10029974.g ID=Lus10029974.BGIv1.0 annot-version=v1.0 MADPDPNGRRNHSLPKRIILVRHGESQGNLDTAAYTHIPDHKIPLTESGKAQAREAGAKLHSLFSFPDCGNSSNTWRAYFYVSPYDRTRSTLREIGTAFD RKMIIGVREECRVREQDFGNFQVEERMKVVKESRARFGRFFFRFPDGESAADVFDRVSNFLESLWRDIEMNRLHHDPSHDLNIIIVTHGLTCRVFLMKWF KWTVEQFELLSNPENCEFRVMQLGSGGEYSLAVHHSEEELREWGLSEAMIADQKWRATANKGDWNDSCPWVLDEFFDPPHGSSEDNDEDESKNVFVCT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05170			Phosphoglycerate mutase family...		Lus10029974 [exp]	0	1
AT1G69330			RING/U-box superfamily protein...		Lus10026648 [exp]	2.0	0.7147
AT5G61510			GroES-like zinc-binding alcoho...		Lus10009018 [exp]	6.6	0.6737
AT3G17090			Protein phosphatase 2C family ...		Lus10017061 [exp]	7.7	0.6524
AT1G25550	GARP		myb-like transcription factor ...		Lus10034280 [exp]	11.5	0.6654
AT4G29270			HAD superfamily, subfamily III...		Lus10043042 [exp]	24.5	0.6439
AT3G57120			Protein kinase superfamily pro...		Lus10016113 [exp]	32.2	0.6353
AT2G32720		B5 #4, B5#4, AT...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Lus10043137 [exp]	32.6	0.6123
AT1G51740		ATSYP81, SYP81,...	ORTHOLOG OF YEAST UFE1 \(UNKNO...		Lus10028252 [exp]	34.6	0.5984
AT1G75540	CO	LHUS, AtBBX21, ...	long hypocotyl under shade, B-...		Lus10017495 [exp]	55.6	0.5928
AT5G24690			Protein of unknown function (D...		Lus10022966 [exp]	63.8	0.5626

Compare expression of checked genes

Lus10029974 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.