Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32580 80 / 6e-19 Protein of unknown function (DUF1068) (.1), Protein of unknown function (DUF1068) (.2) AT4G30996 77 / 1e-17 NKS1 NA\(+\)- AND K\(+\)-SENSITIVE 1, Protein of unknown function (DUF1068) (.1) AT2G24290 76 / 1e-17 Protein of unknown function (DUF1068) (.1) AT1G05070 75 / 7e-17 Protein of unknown function (DUF1068) (.1) AT4G04360 45 / 6e-06 Protein of unknown function (DUF1068) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035349 [exp] 273 / 1e-94 AT2G32580 110 / 2e-30 Protein of unknown function (DUF1068) (.1), Protein of unknown function (DUF1068) (.2) Lus10030034 [exp] 82 / 2e-19 AT1G05070 250 / 1e-85 Protein of unknown function (DUF1068) (.1) Lus10036299 [exp] 81 / 4e-19 AT2G24290 257 / 1e-88 Protein of unknown function (DUF1068) (.1) Lus10019053 [exp] 81 / 4e-19 AT2G24290 259 / 1e-89 Protein of unknown function (DUF1068) (.1) Lus10035288 [exp] 81 / 5e-19 AT1G05070 252 / 1e-86 Protein of unknown function (DUF1068) (.1) Lus10015556 [exp] 67 / 4e-14 AT1G05070 179 / 4e-58 Protein of unknown function (DUF1068) (.1) Lus10020038 [exp] 56 / 7e-10 AT1G05070 167 / 4e-53 Protein of unknown function (DUF1068) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G026900 [exp] 117 / 3e-33 AT2G24290 114 / 2e-32 Protein of unknown function (DUF1068) (.1) Potri.005G038000 [exp] 114 / 3e-32 AT1G05070 110 / 7e-31 Protein of unknown function (DUF1068) (.1) Potri.018G111100 [exp] 79 / 8e-19 AT4G30996 208 / 2e-69 NA\(+\)- AND K\(+\)-SENSITIVE 1, Protein of unknown function (DUF1068) (.1) Potri.004G006500 [exp] 79 / 1e-18 AT2G32580 206 / 6e-68 Protein of unknown function (DUF1068) (.1), Protein of unknown function (DUF1068) (.2) Potri.014G155600 [exp] 77 / 7e-18 AT2G32580 245 / 1e-83 Protein of unknown function (DUF1068) (.1), Protein of unknown function (DUF1068) (.2) Potri.006G187800 [exp] 77 / 9e-18 AT4G30996 198 / 1e-65 NA\(+\)- AND K\(+\)-SENSITIVE 1, Protein of unknown function (DUF1068) (.1) Potri.002G227100 [exp] 73 / 3e-16 AT2G32580 218 / 6e-73 Protein of unknown function (DUF1068) (.1), Protein of unknown function (DUF1068) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06364 [flax] [poplar] DUF1068 Protein of unknown function (DUF1068)
Representative CDS sequence Show only first row Show all	>Lus10029975 pacid=23159747 polypeptide=Lus10029975 locus=Lus10029975.g ID=Lus10029975.BGIv1.0 annot-version=v1.0 ATGGCGTTTCCGTCGGACCATTATGTAACTCGGAGCAGTAGCAACAATGGCGGCGGAGCTCTGAGAGTGACCTTGGCGTTGACTACTATTTTCCTGTTTG TGTATATAATCATGGGACCTCGTGGGAATTCCTCGAGTGTTCATCAAGATTCGTCGTCGTGTCAATGTGACTGCGATTGCGCTGATGCTGCCGATTCCCC GTTTTTGGACTTGCCAGCAGACTCTATCAACGGCTCTTATGCAGACTGCAGAACGAACGATCCGGAGATAAAAGAAGAAGTGGAGAAGGACAGACTAGCA TTGTTATCAGAGGAGATTGTGCTGCAGAAGGTAGTAGCTAACGAAACCCTGCAACGAACCAAATCCCTAACGACGGAGAGTGGAGTAGTCTATTCTCACT ACAAGAGGGAAGCAGAGAAGTGCATTGCGCAAGTGCAAACTTGCGAGGAAGCTCGAGAGAGAGCCGAGGCTGAACTAAGGGAAGAACTCAAGATTACAGC TTCCTGGGAGCAACGAGCTCTTGAACTCGGATGGAGCAGCAAGAGGGTGCAGTGA
AA sequence Show only first row Show all	>Lus10029975 pacid=23159747 polypeptide=Lus10029975 locus=Lus10029975.g ID=Lus10029975.BGIv1.0 annot-version=v1.0 MAFPSDHYVTRSSSNNGGGALRVTLALTTIFLFVYIIMGPRGNSSSVHQDSSSCQCDCDCADAADSPFLDLPADSINGSYADCRTNDPEIKEEVEKDRLA LLSEEIVLQKVVANETLQRTKSLTTESGVVYSHYKREAEKCIAQVQTCEEARERAEAELREELKITASWEQRALELGWSSKRVQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G32580			Protein of unknown function (D...		Lus10029975 [exp]	0	1
AT1G74670		GASA6	GA-stimulated Arabidopsis 6, G...		Lus10008612 [exp]	2.2	0.8428
AT5G42030		ABIL4	ABL interactor-like protein 4 ...		Lus10034928 [exp]	2.4	0.8106
AT4G25050		ACP4	acyl carrier protein 4 (.1.2)		Lus10037910 [exp]	3.5	0.7927
AT1G25570			Di-glucose binding protein wit...		Lus10034275 [exp]	4.6	0.7837
AT1G62400		HT1	high leaf temperature 1, Prote...		Lus10002374 [exp]	4.9	0.8065
AT2G07050		CAS1	cycloartenol synthase 1 (.1)		Lus10014538 [exp]	8.9	0.7660
AT4G31600			UDP-N-acetylglucosamine (UAA) ...		Lus10020119 [exp]	12.5	0.7405
AT4G31600			UDP-N-acetylglucosamine (UAA) ...		Lus10026922 [exp]	13.4	0.7484
AT4G25050		ACP4	acyl carrier protein 4 (.1.2)		Lus10038636 [exp]	15.1	0.7496
AT3G07470			Protein of unknown function, D...		Lus10025861 [exp]	16.3	0.7206

Compare expression of checked genes

Lus10029975 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.