Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27380 697 / 0 GSHB, GSH2 glutathione synthetase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035348 [exp] 1029 / 0 AT5G27380 697 / 0.0 glutathione synthetase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G026800 [exp] 743 / 0 AT5G27380 765 / 0.0 glutathione synthetase 2 (.1) Potri.005G038100 [exp] 737 / 0 AT5G27380 757 / 0.0 glutathione synthetase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0483 [flax] [poplar] PreATP-grasp PF03199 [flax] [poplar] GSH_synthase Eukaryotic glutathione synthase CL0483 [flax] [poplar] PreATP-grasp PF03917 [flax] [poplar] GSH_synth_ATP Eukaryotic glutathione synthase, ATP binding domain
Representative CDS sequence Show only first row Show all	>Lus10029976 pacid=23159675 polypeptide=Lus10029976 locus=Lus10029976.g ID=Lus10029976.BGIv1.0 annot-version=v1.0 ATGGGTGTTGGCTGCTCTTCTTCTCTGAGCCTTTCTTTCCCTCCCACTACTCATGCTGTCGACTGCCCTGCTGTTCCCCACTGTATATCATCATCAGCTC ATTTGAATCCGACCTCAAATTACTTCCCCACAAATCAGCTCTTCTTCAAACACCTTTCTCGGTCCGATTATACCCCAAAGGCTCCGACTTTGAACTGCGG CAGATTAACCCAGATGGCGACTCAAGGAGGAAGTGATTCCAAACCCTCGCTTGGTTTGCACAGAATTGACGAGAAGTTGGTCCAGGAGATGGTCTACGAT GCCCTTGTTTGGAGCTCTTTACATGGCCTTGTTGTTGGCGATAGAAGTGTTCAGAGATCAGGAACAGTACCTGGAGTAGGGATGGTGCATGCTCCGATTG CCTTGCTGCCAACTGCATTCCCAGAAAGTCAGTGGAAGCTAGCTTGTGAAGTGGCACCAATCTTCAATGAACTCGTCGATCGTGTGAGCTTGGATGGAAA GTTCTTACAGGAGTCACTGTCAAGAACAAAGAAAGTGGATGCTTTTACTTCAAGGCTTCTTGACATACACTCCAGGATGCTGGAGACCAACAAGAAAGAG GAGATACGCATGGGTTTGCATCGTTCAGATTACATGCTTGATGAAAAAACTAAGTGTTTGCTTCAAATAGAGTTGAACACAATATCGACCTCGTTCCCTG GTCTTGGTTCACTTGTTAGTGAGCTTCACAGGAACTTGGTAAGGGATTATGGGAAACACCTTGGATGCGACTTCAACAGAGTACCAAGGAACGCCACTGC CAACCAGTTCTCCGAGGCATTGGCCAAAGCTTGGCTTGAATATAACAACCCCAAGTCTGTAATCATGGTTGTCGTTCAAGCTGATGAACGTAACATAGGC GGCCAAGCAGTATCAGTCGTATACTTCAGAGCTGGGTATGCACCAACTGATTATCCTTCCGAAGCAGAATGGAGAGCTAGGCTACTCATGGAGCAATCAT CGGCAGTTAAATGTCCTTCCATATCTTACCATTTGACAGGAACCAAGAAGATCCAGCAGGAACTCGCGAAGCCTAACATGCTCGAGAGATTTCTCGATAA CAAAGACGACATTGCCAAGCTTCGACAGTGCTTTGCTGGATTGTGGAGTTTAGACGACTCAGAAATTGTCAACACAGCCATCGAAAAGCCTCATCTTTTC GTGATGAAGCCCCAAAGAGAAGGCGGAGGGAACAATATCTATGGTGATGAAGTGAGGGAAAACCTACTTAGACTTCAAAAAGAAGGGAAAGAAGAAAAAG ATGCTTACATCCTTATGCAGAGAATCTTTCCGACGGTTTCTGCTACATTCTTGGTCCGCGACGGAATCTGTCATAAAGACCATGCTATATCTGAGCTCGG AATCTACGGTGCTTATCTGAGGAACAAGGATAAAGTTATCGTAAACGAGAAATCTGGATACTTGATGCGAACGAAAGTATCTTCCTCGAACGAAGGAGGA GTTGCAGCCGGGTTTGCTGTCCTGGACAGTATATACTTGACTTAA
AA sequence Show only first row Show all	>Lus10029976 pacid=23159675 polypeptide=Lus10029976 locus=Lus10029976.g ID=Lus10029976.BGIv1.0 annot-version=v1.0 MGVGCSSSLSLSFPPTTHAVDCPAVPHCISSSAHLNPTSNYFPTNQLFFKHLSRSDYTPKAPTLNCGRLTQMATQGGSDSKPSLGLHRIDEKLVQEMVYD ALVWSSLHGLVVGDRSVQRSGTVPGVGMVHAPIALLPTAFPESQWKLACEVAPIFNELVDRVSLDGKFLQESLSRTKKVDAFTSRLLDIHSRMLETNKKE EIRMGLHRSDYMLDEKTKCLLQIELNTISTSFPGLGSLVSELHRNLVRDYGKHLGCDFNRVPRNATANQFSEALAKAWLEYNNPKSVIMVVVQADERNIG GQAVSVVYFRAGYAPTDYPSEAEWRARLLMEQSSAVKCPSISYHLTGTKKIQQELAKPNMLERFLDNKDDIAKLRQCFAGLWSLDDSEIVNTAIEKPHLF VMKPQREGGGNNIYGDEVRENLLRLQKEGKEEKDAYILMQRIFPTVSATFLVRDGICHKDHAISELGIYGAYLRNKDKVIVNEKSGYLMRTKVSSSNEGG VAAGFAVLDSIYLT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27380		GSHB, GSH2	glutathione synthetase 2 (.1)		Lus10029976 [exp]	0	1
AT2G43330		ATINT1	inositol transporter 1 (.1)		Lus10043120 [exp]	8.0	0.7600
AT2G40370		LAC5	laccase 5 (.1)		Lus10007532 [exp]	8.1	0.7732
AT4G36760		ATAPP1	ARABIDOPSIS THALIANA AMINOPEPT...		Lus10041716 [exp]	8.7	0.7442
AT3G29770		ATMES11	ARABIDOPSIS THALIANA METHYL ES...		Lus10030707 [exp]	12.2	0.6862
AT1G05570		ATGSL6, ATGSL06...	GLUCAN SYNTHASE-LIKE 6, callos...		Lus10037469 [exp]	12.7	0.7436
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10006308 [exp]	13.3	0.7615
AT3G14920			Peptide-N4-(N-acetyl-beta-gluc...		Lus10025771 [exp]	16.3	0.7601
AT4G31540		ATEXO70G1	exocyst subunit exo70 family p...		Lus10037329 [exp]	18.0	0.7109
AT3G24840			Sec14p-like phosphatidylinosit...		Lus10038176 [exp]	24.5	0.7156
AT4G34490		ATCAP1	cyclase associated protein 1 (...		Lus10040460 [exp]	27.1	0.7397

Compare expression of checked genes

Lus10029976 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.