Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G038200 [exp] 60 / 1e-11 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029977 pacid=23159864 polypeptide=Lus10029977 locus=Lus10029977.g ID=Lus10029977.BGIv1.0 annot-version=v1.0 ATGGATCAAAGAGGCCAACAACACCTCCAACCTCTCACCATCTGCAACAGACTATACAACTTCATCATGAAATCATTAGCCACACAGGCCTTCAAGACTG TCACCTTAGGCTGCTCAACAACTCCGCCACCGCACCATTTCATCAATGATGGGACTCGAGCCGATCTCGATGAAGGGAAGAGTGATGCTTTGGACGTGAA GCCAGAGGAAGAGAAGGGGGCAAAGAAGACAACTTCCTCTTCATTGGCTAGCTTGCTTGCTAGTGAAGGAAGGGGGCCTCCAAAGAAAGTTGTTAGCATA AATGAGAGGGCTGAGGAGATTGATGCTGGTAAGAGTAAGAAGATGGTGATGATTAGGAGGAAAGGTTCCAGTGAAAAGCTGGATCCTTTTGAAGGGCAAG CTGGAGATTATGATAAGCCTTTGAGATCAATTCTTAAAGTGGGTTCAATGAGTTTAGGTGGGGAGTGA
AA sequence Show only first row Show all	>Lus10029977 pacid=23159864 polypeptide=Lus10029977 locus=Lus10029977.g ID=Lus10029977.BGIv1.0 annot-version=v1.0 MDQRGQQHLQPLTICNRLYNFIMKSLATQAFKTVTLGCSTTPPPHHFINDGTRADLDEGKSDALDVKPEEEKGAKKTTSSSLASLLASEGRGPPKKVVSI NERAEEIDAGKSKKMVMIRRKGSSEKLDPFEGQAGDYDKPLRSILKVGSMSLGGE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10029977 [exp]	0	1
AT1G66240		ATX1, ATATX1	homolog of anti-oxidant 1 (.1....		Lus10034138 [exp]	3.5	0.9286
AT4G22758			unknown protein		Lus10006995 [exp]	5.5	0.9312
AT1G21240		WAK3	wall associated kinase 3 (.1)		Lus10013387 [exp]	5.5	0.9273
AT1G70670		AtCLO4	Arabidopsis thaliana caleosin ...		Lus10034325 [exp]	6.2	0.9395
AT5G48920		TED7	tracheary element differentiat...		Lus10028626 [exp]	7.1	0.9469
AT3G27210			unknown protein		Lus10011366 [exp]	9.6	0.9430
AT4G22758			unknown protein		Lus10000386 [exp]	10.1	0.9090
					Lus10003616 [exp]	11.0	0.8704
					Lus10000510 [exp]	15.4	0.8926
AT4G35350		XCP1	xylem cysteine peptidase 1 (.1...		Lus10030722 [exp]	17.0	0.9391

Compare expression of checked genes

Lus10029977 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.