Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27395 155 / 1e-45 Mitochondrial inner membrane translocase complex, subunit Tim44-related protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035347 [exp] 354 / 5e-124 AT5G27395 183 / 1e-56 Mitochondrial inner membrane translocase complex, subunit Tim44-related protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G026700 [exp] 194 / 2e-60 AT5G27395 356 / 8e-124 Mitochondrial inner membrane translocase complex, subunit Tim44-related protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0051 [flax] [poplar] NTF2 PF04280 [flax] [poplar] Tim44 Tim44-like domain
Representative CDS sequence Show only first row Show all	>Lus10029978 pacid=23159765 polypeptide=Lus10029978 locus=Lus10029978.g ID=Lus10029978.BGIv1.0 annot-version=v1.0 ATGGCTGCTCTTCGCCGCCAAATTCCAGCGATTCGCGCCCTCCTTTCCACTCTCGAGAATCGCCAATCTCCTCACTTGTTTGGAAGCTTTAGAAGCTATT ACGGTGGTATATCGCATGGTATTGGACTTAACTCCTATGGAGATTTGAAATGCTTCCGTAAGATGTACAACGATGTTCCTTGGATGTCCAGAAGTACATT GACATTGCGATCTACAATGGCAGTGGAGGTACCGATTTACCAGAGTGACAGGAGGATGTCTACGACCCAGGTGAAAGCGCCACCACAGTCACGGCAGATG ATGAAAAGTGCCTATGCAATTTCCAAGTTGAGGAAATCTGGATACTCCAAAAAAAAGTTCTACCAAGAGGCCGTTCAGATGTACAAGGAGATAAATGTTC TGCTAGCACATGGCGATAAAGCCACCATTCGTAAAGCAGTTACAGAGAAAATGTACTCTATTGGTGTCGATCGAAGTGACCTTAACAAAGCTTTCATACA GCTAACACTCGAGTTCTTGACGAAACAGAAGTTTGAGGCTTATGATTCAAAAGGTGTTAAAATAGCTGGTAACAAAGACAAAGAGGTACTTGCTCATCGC TTGTCCTTCACAGTGATAACCTGTTTGTGTCACATTGCGAAAGTGCTTAGTCTCAAAGTCGTAAAGCTTGTTTCTTTTTGGTTCATTCTGGAGAGTCTAA ACCAAACTGAAGCAAATTATTCACCACCTCAACCCACTGACCGTACCACTGGATGGTTTTTGCAGGTCCTTGTTCGTGACCTTTGGGTCTTCGAGAAATC CCTTTTCCACAAAGATGCTTTCTGGCGGCTCTGCGGGCGAATTTCGCCCAAGTAA
AA sequence Show only first row Show all	>Lus10029978 pacid=23159765 polypeptide=Lus10029978 locus=Lus10029978.g ID=Lus10029978.BGIv1.0 annot-version=v1.0 MAALRRQIPAIRALLSTLENRQSPHLFGSFRSYYGGISHGIGLNSYGDLKCFRKMYNDVPWMSRSTLTLRSTMAVEVPIYQSDRRMSTTQVKAPPQSRQM MKSAYAISKLRKSGYSKKKFYQEAVQMYKEINVLLAHGDKATIRKAVTEKMYSIGVDRSDLNKAFIQLTLEFLTKQKFEAYDSKGVKIAGNKDKEVLAHR LSFTVITCLCHIAKVLSLKVVKLVSFWFILESLNQTEANYSPPQPTDRTTGWFLQVLVRDLWVFEKSLFHKDAFWRLCGRISPK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27395			Mitochondrial inner membrane t...		Lus10029978 [exp]	0	1
AT1G16280		SWA3, AtRH36	SLOW WALKER 3, Arabidopsis tha...		Lus10006326 [exp]	8.1	0.8138
AT1G16870			mitochondrial 28S ribosomal pr...		Lus10020429 [exp]	8.4	0.8341
AT3G07770		Hsp89.1, AtHsp9...	HEAT SHOCK PROTEIN 90-6, HEAT ...		Lus10012329 [exp]	9.2	0.8193
AT2G42710			Ribosomal protein L1p/L10e fam...		Lus10036988 [exp]	9.8	0.8008
AT5G52380			VASCULAR-RELATED NAC-DOMAIN 6 ...		Lus10039230 [exp]	12.0	0.7988
AT1G16870			mitochondrial 28S ribosomal pr...		Lus10007056 [exp]	12.2	0.8331
AT5G14580			polyribonucleotide nucleotidyl...		Lus10022250 [exp]	12.2	0.8210
AT1G63660			GMP synthase (glutamine-hydrol...		Lus10024632 [exp]	15.5	0.8292
AT1G09830			Glycinamide ribonucleotide (GA...		Lus10013696 [exp]	16.1	0.8103
AT3G27550			RNA-binding CRS1 / YhbY (CRM) ...		Lus10003667 [exp]	29.0	0.7963

Compare expression of checked genes

Lus10029978 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.