Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54790 544 / 0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3) AT3G05180 429 / 3e-150 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G09390 301 / 3e-100 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G56670 301 / 3e-100 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G26430 286 / 4e-94 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G14450 284 / 4e-93 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G67830 283 / 7e-93 ATFXG1 Arabidopsis thaliana alpha-fucosidase 1, alpha-fucosidase 1 (.1) AT3G62280 278 / 3e-91 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G27950 252 / 7e-81 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT4G01130 249 / 2e-79 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029638 [exp] 431 / 1e-150 AT1G54790 443 / 2e-155 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3) Lus10029639 [exp] 427 / 1e-149 AT1G54790 421 / 4e-147 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3) Lus10032094 [exp] 278 / 1e-90 AT5G14450 578 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10014592 [exp] 276 / 9e-90 AT5G14450 573 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10008784 [exp] 273 / 5e-89 AT3G27950 391 / 2e-135 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10001522 [exp] 273 / 8e-89 AT1G09390 459 / 3e-162 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10006224 [exp] 262 / 1e-80 AT3G26430 342 / 5e-111 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10031438 [exp] 243 / 1e-75 AT1G09390 406 / 4e-139 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10012644 [exp] 237 / 5e-75 AT4G01130 494 / 1e-175 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G026300 [exp] 621 / 0 AT1G54790 605 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3) Potri.005G038800 [exp] 616 / 0 AT1G54790 595 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3) Potri.002G216000 [exp] 458 / 1e-161 AT1G54790 474 / 1e-167 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3) Potri.005G177700 [exp] 306 / 1e-101 AT3G26430 407 / 2e-141 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.002G083800 [exp] 303 / 2e-100 AT3G26430 405 / 8e-141 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.001G074400 [exp] 302 / 3e-100 AT3G26430 388 / 8e-134 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G006500 [exp] 299 / 3e-99 AT1G09390 506 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.002G083700 [exp] 291 / 8e-96 AT3G26430 417 / 3e-145 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.010G047900 [exp] 287 / 3e-94 AT3G26430 504 / 1e-179 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.008G185500 [exp] 286 / 4e-94 AT3G26430 534 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10029980 pacid=23159828 polypeptide=Lus10029980 locus=Lus10029980.g ID=Lus10029980.BGIv1.0 annot-version=v1.0 ATGGAGACCAAAGTTTTGTTCTTTGTTCTCCATTCTATGTTCTTCTTCTCCTTCTCCTCGGCTTATTCCATAGACTTCAACTTCCCTGCTGTGTTCAACT TCGGTGACTCGAACTCGGACACTGGCAACCTCATTGCTGGCGGGTTCGAGTCCATCAACCCGCCTTACGGCCAGATTCACTTCAAGAATCCTTCTGGGAG ATACTCTGATGGCCGTCTGACCATTGATTTCATTATGGATGCTATGGATCTTCCATTTCTGAATGCATATCTGGAAGCCATTGGGCTGCCGAATTTTCAT AAAGGATCCAACTTTGCTGCTGCTGGTGCAACTATACTTCCAGCAACAGCAACCTCTGTCTGCCCCTTTTCGTTCGGGATTCAGGTGTCTCAGTTCCTCC GCTTCAAATCCCGTGTCCTTGAGCTGCTCTCGAAAGGTAAGAAGCTTGACAGATACCTTCCAGCTGAGGACTATTTCCAGAAGGGACTGTACATGTTTGA TATAGGCCAAAACGATTTAGCTGGTGCATTCTACTCGAAGACTTTCGATCAAATAGTTGCCTCGATCCCAACCATCTTGATCGAATTCGAGAATGGAATC AAGAGACTATACGACGAAGGAGCGAGGAACTTTTGGATACACAACACAGGTCCTCTTGGATGTTTGGCTCAGAATGTAGCGAAATTCGGGACCGATCCAT CCAAGCTGGACGAGCAAGGATGTGTTTCGGGCCATAATCAAGCTGCTAAGCTTCTCAATCTGCAGCTTCATGCTCTCACCAAGAAACTGCAAGGACAGTT TGCTGATTCAAGCATCACATATGTTGATATATACACAATAAAATCCAACCTCATCTCGAACTACTCCAGATACGGATTTGAGCAACCTATTATGGCTTGC TGTGGCTATGGAGGGCCACCTCTGAACTACGACAGCCGAGTTGGCTGTGGACAAACGAAAGTAATCAATGGGTCAACAGCTACAGCTAAGGCTTGCAATG ACAGTACTGAATATGTCAACTGGGATGGGATTCATTACACAGAAGCTGCAAACCAGTATGTTTCGAATGAAATACTCACAGGAAAGTATGCTGACCCGCC GTTCACTGACAAAATGCCTTTTGCTCTCAGCCTCAAGTTCTGA
AA sequence Show only first row Show all	>Lus10029980 pacid=23159828 polypeptide=Lus10029980 locus=Lus10029980.g ID=Lus10029980.BGIv1.0 annot-version=v1.0 METKVLFFVLHSMFFFSFSSAYSIDFNFPAVFNFGDSNSDTGNLIAGGFESINPPYGQIHFKNPSGRYSDGRLTIDFIMDAMDLPFLNAYLEAIGLPNFH KGSNFAAAGATILPATATSVCPFSFGIQVSQFLRFKSRVLELLSKGKKLDRYLPAEDYFQKGLYMFDIGQNDLAGAFYSKTFDQIVASIPTILIEFENGI KRLYDEGARNFWIHNTGPLGCLAQNVAKFGTDPSKLDEQGCVSGHNQAAKLLNLQLHALTKKLQGQFADSSITYVDIYTIKSNLISNYSRYGFEQPIMAC CGYGGPPLNYDSRVGCGQTKVINGSTATAKACNDSTEYVNWDGIHYTEAANQYVSNEILTGKYADPPFTDKMPFALSLKF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G54790			GDSL-like Lipase/Acylhydrolase...		Lus10029980 [exp]	0	1
AT3G50760		GATL2	galacturonosyltransferase-like...		Lus10016302 [exp]	1.4	0.9663
AT3G59530		LAP3	LESS ADHERENT POLLEN 3, Calciu...		Lus10019377 [exp]	2.0	0.9607
AT5G60020		LAC17, ATLAC17	laccase 17 (.1)		Lus10034439 [exp]	2.0	0.9654
AT5G15870			glycosyl hydrolase family 81 p...		Lus10042526 [exp]	2.2	0.9605
AT1G76250			unknown protein		Lus10012274 [exp]	6.0	0.9640
AT3G59530		LAP3	LESS ADHERENT POLLEN 3, Calciu...		Lus10008151 [exp]	7.0	0.9544
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10002199 [exp]	7.1	0.9429
AT1G09890			Rhamnogalacturonate lyase fami...		Lus10028212 [exp]	8.7	0.9414
AT5G04200		AtMCP2f, ATMC9	metacaspase 2f, metacaspase 9 ...		Lus10012106 [exp]	8.8	0.9568
AT1G63120		ATRBL2	RHOMBOID-like 2 (.1)		Lus10017840 [exp]	11.4	0.9475

Compare expression of checked genes

Lus10029980 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.