Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63480 410 / 2e-138 ATP binding microtubule motor family protein (.1.2) AT3G19050 196 / 4e-53 POK2 phragmoplast orienting kinesin 2 (.1) AT4G14150 195 / 7e-53 KINESIN-12A, PAKRP1 phragmoplast-associated kinesin-related protein 1 (.1) AT3G23670 189 / 5e-51 PAKRP1L ,KINESIN-12B phragmoplast-associated kinesin-related protein, putative (.1.2) AT3G44050 189 / 6e-51 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G12430 188 / 6e-51 AtKINUa, ARK3, PAK phosphatidic acid kinase, Arabidopsis thaliana KINESIN Ungrouped clade, gene A, armadillo repeat kinesin 3 (.1.2) AT2G28620 186 / 4e-50 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G45850 185 / 1e-49 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G12020 184 / 1e-49 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G47820 183 / 4e-49 FRA1 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035344 [exp] 409 / 2e-140 AT3G63480 253 / 2e-81 ATP binding microtubule motor family protein (.1.2) Lus10035343 [exp] 380 / 2e-129 AT3G63480 228 / 8e-72 ATP binding microtubule motor family protein (.1.2) Lus10027934 [exp] 204 / 6e-56 AT3G19050 1521 / 0.0 phragmoplast orienting kinesin 2 (.1) Lus10012048 [exp] 203 / 1e-55 AT3G19050 1758 / 0.0 phragmoplast orienting kinesin 2 (.1) Lus10008438 [exp] 190 / 3e-51 AT3G44050 1209 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10021969 [exp] 190 / 3e-51 AT3G23670 689 / 0.0 phragmoplast-associated kinesin-related protein, putative (.1.2) Lus10021340 [exp] 189 / 5e-51 AT2G36200 1499 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10013377 [exp] 188 / 2e-50 AT3G44050 1290 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10017016 [exp] 187 / 2e-50 AT2G36200 1381 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G038900 [exp] 466 / 4e-160 AT3G63480 533 / 0.0 ATP binding microtubule motor family protein (.1.2) Potri.014G149000 [exp] 204 / 5e-56 AT3G23670 1426 / 0.0 phragmoplast-associated kinesin-related protein, putative (.1.2) Potri.002G235500 [exp] 196 / 2e-53 AT3G23670 1399 / 0.0 phragmoplast-associated kinesin-related protein, putative (.1.2) Potri.004G145800 [exp] 195 / 8e-53 AT3G19050 1765 / 0.0 phragmoplast orienting kinesin 2 (.1) Potri.004G193700 [exp] 191 / 2e-51 AT3G44050 1236 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.009G026000 [exp] 187 / 1e-50 AT3G45850 1520 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.006G082900 [exp] 187 / 2e-50 AT2G37420 1219 / 0.0 ATP binding microtubule motor family protein (.1) Potri.006G210700 [exp] 185 / 1e-49 AT2G36200 1442 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.009G156000 [exp] 184 / 2e-49 AT3G44050 1231 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G233700 [exp] 184 / 2e-49 AT3G45850 1554 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00225 [flax] [poplar] Kinesin Kinesin motor domain
Representative CDS sequence Show only first row Show all	>Lus10029983 pacid=23159887 polypeptide=Lus10029983 locus=Lus10029983.g ID=Lus10029983.BGIv1.0 annot-version=v1.0 ATGAATCAGGTGAGCATCATCGCGTTTCGTCTGCTAGTGTTCATACTCGCTTCTCAATTTCGACTTACTTCTCTCGTTCTGGCTAACTACGATCAGGAAA TCGAAGCTTCTCCTTCGCCGAAAAAGCAGACGGCGAATGTGACGGTTTGTTCTCGCTTCAGGCCTCTGAGCTCAAAGGAGAGGAGAGATCACGGCGGGCG GGTTTGCTTGCGCCGCGTCGACGGCGAGAATTTCGTCCTCAAGGACGAGAAGGACGAGGACTTTACTTTCAGCTTCGACAGGGTCTTCTATGAAGATTCC CTGCAAGTTGACGTGTATGATTTCCTCGCATTGCCTATCGTCAAAGATGCTGTCAATGGAGTGAACGGGACCATTATCGCTTATGGTCAGACGGGAGCTG GGAAGACGTACAGCATGGAGGGACCGGATGTGCTGAAATCAGATGATATGCAGAAAGGGCTACTTCCAAGAGTAGTGGATGGTTTGTTCGATCATATTGC ATCTGCTGGTGATTCAAGCAAGTACAAAATCAAGCTGTCTATGGTAGAGATATACATGGAGAGAGTCAGGGATCTCTTTGACTTGGCAAAAGACAATCTA TTGATTAAGCAGAGTAAAGAGAATGGGATGTTGGTTTCTGGAGTGACAGAGGCAAGTGTACTTTTGACTTCTAGTATCATTGCTAGAAACGATGTAGCAA GCTTGCAAAGAACGAGAAGCTTTGCGGAACCTACAAGTAAGATGAGTTTAGTTTGGAACCTTTCTTTCATACCATTCCATGTTCTCAAGCTAAGATTTAA CTTGCAGCGTGGAATACTGAACAGAGCTGTTGGCGAAACCCTCCAACAAGAGCTAACAAGAGAGAGGACACGAACTGGAAAACTGGTCCTAGTTGACTTA GCAGGATCTGAGAAGGTAGAGAAAACAGGAGCTGAAGGGAAACTTCTTGAAGAAGCCAAAACCATTAACAAATCTCTATCAGCTTTAGGCAACGTGATAA ATGCTCTGACATGCAGCTCATCCAAACCCAGTCACATACCTTATCGTGACTCGAAGCTGACTAGGCTTCTCCAAGATGCTCTGGGAGGCAACTCTAGGAC TGCTTTAATCTGTTGCTGCTCCCCTAGTTCTTCAAACTCTTCAGAAACATTCTCCACTCTTCGTTTTGGTACAAGGGCGAAATATATCAAGACATCACCT CTCGTCAAGCAAATCATTGAAAACGAGGAGACTGAAGCCAAGAAGCATGCTGCAGATGTTGTGATAAACGACGAACCTGAAAAAACTCCAGCAAAGAAGA CTTCACCTACTGTGACACATACTGATGAGGTTGGATCTCAAGTCCCAAAGAAAGATGAATGCCGTGAAAGAATCCTAGCTAAGCTGAGCGAGAGATTGGA CGAAGAGGAAATCAACTTACTCGAGGAGATACTCGTACTGGAAGGGATACTGTTTGATCCAAGCACAGCTTTAGATTCGGAGGCTGAATTAGAAGACATA ACTACACGTACAATTTCCTTGCTGCAACAGAGTCTACAAGAGCTTGTGATTACTTGCGAAGAGCTAAAGAGTGAGAACAAGGCTCTGAAAGCTAGAATTG CAGCTGGTAGACTTATGGATGATGGAGAGGAAGATGCCAAGGGAAATGGAAGAAGCTTGGTGCAGAAAGTTGTAGGGAGTTTCAGCTTCTTGTTACGATC GATTCGGTCTGAGCCAGTCAAATCTGTGGAGTAA
AA sequence Show only first row Show all	>Lus10029983 pacid=23159887 polypeptide=Lus10029983 locus=Lus10029983.g ID=Lus10029983.BGIv1.0 annot-version=v1.0 MNQVSIIAFRLLVFILASQFRLTSLVLANYDQEIEASPSPKKQTANVTVCSRFRPLSSKERRDHGGRVCLRRVDGENFVLKDEKDEDFTFSFDRVFYEDS LQVDVYDFLALPIVKDAVNGVNGTIIAYGQTGAGKTYSMEGPDVLKSDDMQKGLLPRVVDGLFDHIASAGDSSKYKIKLSMVEIYMERVRDLFDLAKDNL LIKQSKENGMLVSGVTEASVLLTSSIIARNDVASLQRTRSFAEPTSKMSLVWNLSFIPFHVLKLRFNLQRGILNRAVGETLQQELTRERTRTGKLVLVDL AGSEKVEKTGAEGKLLEEAKTINKSLSALGNVINALTCSSSKPSHIPYRDSKLTRLLQDALGGNSRTALICCCSPSSSNSSETFSTLRFGTRAKYIKTSP LVKQIIENEETEAKKHAADVVINDEPEKTPAKKTSPTVTHTDEVGSQVPKKDECRERILAKLSERLDEEEINLLEEILVLEGILFDPSTALDSEAELEDI TTRTISLLQQSLQELVITCEELKSENKALKARIAAGRLMDDGEEDAKGNGRSLVQKVVGSFSFLLRSIRSEPVKSVE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G63480			ATP binding microtubule motor ...		Lus10029983 [exp]	0	1
AT3G22880		ARLIM15, ATDMC1	ARABIDOPSIS THALIANA DISRUPTIO...		Lus10006625 [exp]	1.0	0.8495
AT1G12790			unknown protein		Lus10003529 [exp]	5.3	0.7775
					Lus10042085 [exp]	10.0	0.7602
AT5G18420			unknown protein		Lus10027578 [exp]	11.7	0.7533
AT3G07170			Sterile alpha motif (SAM) doma...		Lus10022780 [exp]	11.9	0.8331
AT1G06980			unknown protein		Lus10020386 [exp]	12.5	0.7779
AT5G65700		BAM1	BARELY ANY MERISTEM 1, Leucine...		Lus10011577 [exp]	13.3	0.7268
AT3G04670	WRKY	ATWRKY39, WRKY3...	WRKY DNA-binding protein 39 (....		Lus10014745 [exp]	15.9	0.7888
AT5G65700		BAM1	BARELY ANY MERISTEM 1, Leucine...		Lus10011576 [exp]	18.2	0.7353
AT4G37810			unknown protein		Lus10011570 [exp]	19.0	0.7682

Compare expression of checked genes

Lus10029983 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.