Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05190 810 / 0 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1) AT5G27410 805 / 0 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1.2) AT5G65780 62 / 4e-10 ATBCAT-5 branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5) (.1), branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5) (.2) AT3G49680 58 / 1e-08 ATBCAT-3 ,BCAT3 branched-chain aminotransferase 3 (.1.2) AT1G50110 53 / 3e-07 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1) AT1G50090 52 / 7e-07 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1) AT1G10060 51 / 1e-06 ATBCAT-1 branched-chain amino acid transaminase 1 (.1.2.3) AT3G19710 47 / 3e-05 BCAT4 branched-chain aminotransferase4 (.1) AT1G10070 45 / 0.0001 ATBCAT-2 branched-chain amino acid transaminase 2 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035342 [exp] 1035 / 0 AT5G27410 910 / 0.0 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1.2) Lus10011567 [exp] 54 / 3e-07 AT3G49680 615 / 0.0 branched-chain aminotransferase 3 (.1.2) Lus10019258 [exp] 52 / 6e-07 AT3G49680 613 / 0.0 branched-chain aminotransferase 3 (.1.2) Lus10032806 [exp] 48 / 1e-05 AT1G10070 484 / 1e-172 branched-chain amino acid transaminase 2 (.1.2.3) Lus10007246 [exp] 45 / 7e-05 AT3G49680 327 / 6e-111 branched-chain aminotransferase 3 (.1.2) Lus10028247 [exp] 44 / 0.0002 AT1G10070 469 / 6e-168 branched-chain amino acid transaminase 2 (.1.2.3) Lus10007247 [exp] 43 / 0.0007 AT1G10070 517 / 0.0 branched-chain amino acid transaminase 2 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G039100 [exp] 846 / 0 AT5G27410 882 / 0.0 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1.2) Potri.002G113600 [exp] 62 / 3e-10 AT1G10070 555 / 0.0 branched-chain amino acid transaminase 2 (.1.2.3) Potri.007G008000 [exp] 53 / 4e-07 AT5G65780 578 / 0.0 branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5) (.1), branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5) (.2) Potri.009G082700 [exp] 52 / 5e-07 AT1G10070 446 / 2e-156 branched-chain amino acid transaminase 2 (.1.2.3) Potri.009G082600 [exp] 52 / 7e-07 AT1G50110 448 / 4e-158 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01063 [flax] [poplar] Aminotran_4 Amino-transferase class IV
Representative CDS sequence Show only first row Show all	>Lus10029984 pacid=23159672 polypeptide=Lus10029984 locus=Lus10029984.g ID=Lus10029984.BGIv1.0 annot-version=v1.0 ATGGCCAAAGAGGGTGCTGTGGAGGTGATTCATTCATGGTCAGCGCCGAGATCTCTCAGCACCAGCCTCATGTACTCTTTTGCTCAGAGAGATGACATTG AAGTTCTTGATGAACCTTTATACGCAAATTTCCTAAAAGCGACAGGTGCTGTACATCCGTGCAGAGAACAAGTTCTATCCTCCATGGAAACTGATGGGGA TAAGGTTGTAAAGGATTTAATCTACACTCCAGGAAGAACAAAGTACAGATACTGTAAGCATATCTCAAAGCAAAGGTATCCTGGATTGCCAATTGATCTC ATGAATGAAGGAAAGCACTTCATATTGATACACAATCCTCTGGACATATTGCCCTCCTTTGATAAAGTTGTGCCCCCGTCATTTTTTGAGTTAGGTCTAG CAGAATTGGTCTCGGTATACAGCGATCTATGCCGATTGGGAACCCCTCCACCAGTTATTGATGCTGCAGACCTTGAGCAAGACCCTGAGAGAACTCTCCG CGGTCTTTGTGAAGAATTGAGTATACCTTTCCAGAACTCAATGCTGAGCTGGGAAGCTGGTCCAAAACCATTTGATGGAGTTTGGGCTCCATGGTGGTAT AAAACCGTGCACGAGTCGACAAGCTTCACACCCAGGAGAAAGTATCCCAAGCCATTTCCCTTTGCCTTCTATGACTTGTTGGAACAAGCCATGCCTTTGT ACAACGTGCTACGTCGCCATGTAAAACGTCCATCAAACCTTCTGAAGAGCCCATTACCTCCCCCTGATCTTCCAGTTCCCGAGAACGAGAAGCTCCTTGC ATGGATTGGAGATGAGATCCTTCCCCGCGAGAGTGCCAAAGTTTCTGTGTTCGACTCGATTGTTCAAGGAGGCGACTCGGTGTGGGAGGGACTACGCGTT TATGATGGGAGAGTATTTAAGCTTGAGGAACATTTAGACAGAATGTTCGATTCAGCAAAGGCTCTTGCTTTCAGCAACGTTCCCAGTCGTGACGAGATCA AGGAAGCCATCTTCAGAACTCTAATAAGGAATGGGATGTTCAATAATGCACACATCCGGTTGTCTCTTACTCGAGGGAAGAAAGTTACTTCCGGGATGAG TCCTTCGTTCAATCTGCATGGATGTACATTGATCGGTAAATCCTATGACTTCTTCATGTCTCACGGTACCAATTACGAAGATCGGATCTTTAAGGTTAAC ACCTTTCCTTTTTGCCTGCCAGTGCTTGCTGAATGGAAACCCCCAGTTTATGACAATGCACATGGAATAACTCTTGTTACCGCCACCACTAGGCGTAACT CACCAAATAATCTGGATTCAAAGATTCACCACAATAACCTTCTCAACAACATACTTGCCAAGATTGAAGGGAACAATGTCTCGGCTGATGATGCAATCAT GCTCGACAAGGACGGTTATGTCTCCGAAACGAATGCTACAAATATTTTCTTGGTGAAGAAAGGTCTTGTCTTAACTCCACATGCCGATTACTGCCTCCCT GGCATCACCAGAGCTACTGTGATGGAACTTGTAGTCAAGGAGAGCATCGTGTTAGAAGAACGTAGGCTCAGCTTGTCAGAGTTCCACACTGCAGATGAGG TATGGACAGTCGTGAAGATTGATGGACGAGAAGTCGGTCATGGACAAGTCGGGGACGTTACAAAGAGGATCCAACAAGCTTACAAGAATCTTACACATGA CTCTGGAGTGCCTATTCCCACCTACAAGGAAAGCTGA
AA sequence Show only first row Show all	>Lus10029984 pacid=23159672 polypeptide=Lus10029984 locus=Lus10029984.g ID=Lus10029984.BGIv1.0 annot-version=v1.0 MAKEGAVEVIHSWSAPRSLSTSLMYSFAQRDDIEVLDEPLYANFLKATGAVHPCREQVLSSMETDGDKVVKDLIYTPGRTKYRYCKHISKQRYPGLPIDL MNEGKHFILIHNPLDILPSFDKVVPPSFFELGLAELVSVYSDLCRLGTPPPVIDAADLEQDPERTLRGLCEELSIPFQNSMLSWEAGPKPFDGVWAPWWY KTVHESTSFTPRRKYPKPFPFAFYDLLEQAMPLYNVLRRHVKRPSNLLKSPLPPPDLPVPENEKLLAWIGDEILPRESAKVSVFDSIVQGGDSVWEGLRV YDGRVFKLEEHLDRMFDSAKALAFSNVPSRDEIKEAIFRTLIRNGMFNNAHIRLSLTRGKKVTSGMSPSFNLHGCTLIGKSYDFFMSHGTNYEDRIFKVN TFPFCLPVLAEWKPPVYDNAHGITLVTATTRRNSPNNLDSKIHHNNLLNNILAKIEGNNVSADDAIMLDKDGYVSETNATNIFLVKKGLVLTPHADYCLP GITRATVMELVVKESIVLEERRLSLSEFHTADEVWTVVKIDGREVGHGQVGDVTKRIQQAYKNLTHDSGVPIPTYKES

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27410			D-aminoacid aminotransferase-l...		Lus10029984 [exp]	0	1
AT2G32630			Pentatricopeptide repeat (PPR-...		Lus10018019 [exp]	1.4	0.8845
AT5G62760			P-loop containing nucleoside t...		Lus10042176 [exp]	10.0	0.8345
AT4G11640		ATSR	serine racemase (.1)		Lus10008490 [exp]	12.0	0.8720
AT1G67490		KNOPF, KNF, GCS...	KNOPF, glucosidase 1 (.1.2)		Lus10037009 [exp]	13.2	0.7671
AT5G44090			Calcium-binding EF-hand family...		Lus10003628 [exp]	17.6	0.8543
AT1G36050			Endoplasmic reticulum vesicle ...		Lus10003406 [exp]	18.9	0.8526
AT4G02460		PMS1	POSTMEIOTIC SEGREGATION 1, DNA...		Lus10030376 [exp]	20.9	0.8266
AT3G48470		EMB2423	embryo defective 2423 (.1)		Lus10001100 [exp]	33.0	0.8347
AT4G03115			Mitochondrial substrate carrie...		Lus10024769 [exp]	34.8	0.8417
AT5G66600			Protein of unknown function, D...		Lus10016786 [exp]	35.4	0.8238

Compare expression of checked genes

Lus10029984 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.