Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09620 305 / 2e-92 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G20920 194 / 6e-53 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G13780 48 / 2e-05 F-box/RNI-like/FBD-like domains-containing protein (.1) AT5G44950 48 / 2e-05 F-box/RNI-like/FBD-like domains-containing protein (.1) AT1G16930 47 / 4e-05 F-box/RNI-like/FBD-like domains-containing protein (.1) AT5G53840 46 / 5e-05 F-box/RNI-like/FBD-like domains-containing protein (.1) AT1G78730 45 / 8e-05 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1) AT5G22660 45 / 8e-05 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1.2) AT1G60400 45 / 9e-05 F-box/RNI-like superfamily protein (.1) AT1G47915 41 / 9e-05 F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029998 [exp] 539 / 2e-178 AT1G05020 437 / 5e-139 ENTH/ANTH/VHS superfamily protein (.1) Lus10035328 [exp] 337 / 7e-113 AT1G20920 293 / 3e-94 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10035326 [exp] 193 / 1e-57 AT5G27750 66 / 1e-12 F-box/FBD-like domains containing protein (.1) Lus10030016 [exp] 181 / 6e-48 AT2G32970 799 / 0.0 unknown protein Lus10025525 [exp] 153 / 8e-41 AT1G20920 451 / 2e-150 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10026739 [exp] 147 / 6e-39 AT1G20920 174 / 9e-69 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10018543 [exp] 132 / 9e-32 AT1G03510 534 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10007227 [exp] 103 / 6e-25 ND / Lus10037440 [exp] 104 / 5e-23 AT1G69630 84 / 5e-17 F-box/RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G257400 [exp] 206 / 2e-56 AT1G20920 1253 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.002G003600 [exp] 205 / 4e-56 AT1G20920 1201 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.017G093600 [exp] 48 / 2e-05 AT3G29390 443 / 3e-149 RS2-interacting KH protein (.1) Potri.011G104100 [exp] 47 / 2e-05 AT3G26922 96 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.011G104200 [exp] 47 / 2e-05 AT3G26922 97 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.001G395000 [exp] 46 / 7e-05 AT4G14103 89 / 4e-19 F-box/RNI-like superfamily protein (.1.2) Potri.011G104300 [exp] 46 / 7e-05 AT3G26922 91 / 2e-20 F-box/RNI-like superfamily protein (.1) Potri.017G146400 [exp] 43 / 0.0005 AT3G28410 79 / 2e-15 F-box/RNI-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029986 pacid=23159693 polypeptide=Lus10029986 locus=Lus10029986.g ID=Lus10029986.BGIv1.0 annot-version=v1.0 ATGGAGAGCCAACCTACAAAATCGACCACCGGAGGAAAAGATCGAATCTCGGAATTGCCAGATGCAATCCTCCACTGCATCTTCCGCCACATACCGTCCT CCAAAGAAACAGTGCAGACTGCCGTACTTTCCAGTCGATGGCGTAATCTCTTGCGCTCTTACCCTGTCGTGGAGGTCAAACCCACGACAGCAGAGTGTGT AGCCATCAAGGTAAGTATCCGTGGCGTCAAAGAATGCGTATATCCCTTCCTCCGCTTGTCCTTCGAATCACTCTCGAATTCCAGCGCAAGGACTCTCCAC CTGGAGAGAATCCGGTTTAAATCGAAGGAAAACAGTGAGGAAGATGTCGGTCTTTCCCTTGATTCTCTACTTCACTTGCATCTGGATAGGATCCAATTCC GGCATCCTCGGCTTTTCACAAGCTTGATGGCTAGCTCTCCGCTCCTCGAAACCCTAGAAATCATCCGTTATGTTTACGGGATGAGGAACCTAAATTTTCC CAATCTGAAGACCCTCAAAATTTCAACAATCATCGACAGGGACAAGAGTACTGATGGAGTGTTCATGGACGAGTTCATAGCCCCTCAGCTGAATACTCTG GAAATTGATAATTGTTTTTATTTGAGATTGAGTGATGTATCTCGGGCAGGTTCTAAGCTCGAGAATCTGAAGTACTTGACCCTTACTCGATTCGATCCAC CAGAGAAGACACTGAAACTTTCGTGTCCCAAGCTCGAGGAATTCAATCTGTGGGCGCCGCCTGGACTGGAAGAGATCGAGCTCGACGTTAAGCCTTGCTT TAGGAAGTTTTTCATGCATAACCGCAGATCATTGCCGGGCGAATTGAAGAAATATGAAATCCATGGTGCCGCCGCTGATTGTCGATGGGAAGTTGATTTC TGCATAACGAGTATTTGCTTACAAAATTCTGTATCACACCAATGGTTTGTTGGATTCAAGAGCTTCATGATGAGATTCCCTCAGCTCCACGCCATTAGCA TCTCCAGCTGGGACGATGCGAGATACGCGCCAGATCTCGTCAAGGCGTTGGAGCTTTCGGAGCAAGTCGTGCCAGATGATCTGAAGGCTCTTGCAGACGG GTTTATGGCGAAGGTGAATCAAGGGCTCGAGCAGGCACACGGTACTGGTTACGGTGGGAGCGGGTTCAAGTTCAACGAAGAGGAGGATGAAAAGAGAATG GCGGCGAAGAAAGCGCAGGCGAAAGAGTACGGCTTCGAGGAGGACAAGTCTGATTCGGAAGATGACGATGAAGGAATTCGAAAGACCGGGAACGATTTGT CGCAGCAGGCTGCCCGTGCTCAGCAGATGGCGGTTCTCGCCGCGGCCGCTGTCAAGGCGACGGAACCGCCAGCTGGTGCGCTCGGCGTACCGACGATTTC AGTTCAGTCGGCCGATGGGACCGCCAGAGCGCAAGCCCAAGCATTGGCGGCGGCGATGAACTTGCAGCATAACTTGGCGAAGCTTCAAGCTGATGCTTTG CCGGAGCACTACGAAGCGGAGCTGGAGATCAACGATTTCCCTCAGAACGCTCGGTGGAAGGTGACGCACAAGGAAACGTTGGGGCCGATTTCGGAGTGGA CCGGAGCTGCCATTACGACGAGGGGGCAGTACTTCCAGCCAGGGCGTATACCTGGGGCGGGAGATAGGAAGTTGTACTTGTTCATTGAAGGGCCGAATGA GATATCTGTGAAGAGGGCTAAGGCGGAACTGAAGCGTGTCCTAGAAGATATTACTAACCAGGCATTGTCGCTTCCTGGTGGTGCACAGCCCGGAAAGTAC TCCGTTGTATAA
AA sequence Show only first row Show all	>Lus10029986 pacid=23159693 polypeptide=Lus10029986 locus=Lus10029986.g ID=Lus10029986.BGIv1.0 annot-version=v1.0 MESQPTKSTTGGKDRISELPDAILHCIFRHIPSSKETVQTAVLSSRWRNLLRSYPVVEVKPTTAECVAIKVSIRGVKECVYPFLRLSFESLSNSSARTLH LERIRFKSKENSEEDVGLSLDSLLHLHLDRIQFRHPRLFTSLMASSPLLETLEIIRYVYGMRNLNFPNLKTLKISTIIDRDKSTDGVFMDEFIAPQLNTL EIDNCFYLRLSDVSRAGSKLENLKYLTLTRFDPPEKTLKLSCPKLEEFNLWAPPGLEEIELDVKPCFRKFFMHNRRSLPGELKKYEIHGAAADCRWEVDF CITSICLQNSVSHQWFVGFKSFMMRFPQLHAISISSWDDARYAPDLVKALELSEQVVPDDLKALADGFMAKVNQGLEQAHGTGYGGSGFKFNEEEDEKRM AAKKAQAKEYGFEEDKSDSEDDDEGIRKTGNDLSQQAARAQQMAVLAAAAVKATEPPAGALGVPTISVQSADGTARAQAQALAAAMNLQHNLAKLQADAL PEHYEAELEINDFPQNARWKVTHKETLGPISEWTGAAITTRGQYFQPGRIPGAGDRKLYLFIEGPNEISVKRAKAELKRVLEDITNQALSLPGGAQPGKY SVV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G20920			P-loop containing nucleoside t...		Lus10029986 [exp]	0	1
AT1G20920			P-loop containing nucleoside t...		Lus10035328 [exp]	1.0	0.9437
AT1G20920			P-loop containing nucleoside t...		Lus10035327 [exp]	3.2	0.8863
AT5G58870		FTSH9	FTSH protease 9 (.1)		Lus10001203 [exp]	5.7	0.8357
AT3G55640			Mitochondrial substrate carrie...		Lus10004689 [exp]	8.1	0.8325
AT1G22310		ATMBD8, MBD8	methyl-CPG-binding domain 8 (....		Lus10035631 [exp]	8.8	0.8524
AT5G10940		ASG2	ALTERED SEED GERMINATION 2, tr...		Lus10040538 [exp]	9.0	0.8821
AT1G60900			U2 snRNP auxilliary factor, la...		Lus10037299 [exp]	14.7	0.8355
AT1G32420			F-box and associated interacti...		Lus10016866 [exp]	18.5	0.8472
AT5G09630			LisH/CRA/RING-U-box domains-co...		Lus10007106 [exp]	23.0	0.8130
AT2G25970			KH domain-containing protein (...		Lus10004446 [exp]	27.0	0.8744

Compare expression of checked genes

Lus10029986 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.