Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04990 315 / 2e-103 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) AT2G32930 292 / 1e-93 C3HZnF ZFN2 zinc finger nuclease 2 (.1.2) AT3G02830 251 / 2e-78 C3HZnF ZFN1 zinc finger protein 1 (.1) AT2G47850 234 / 2e-71 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2.3) AT5G18550 228 / 5e-69 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT5G16540 225 / 9e-69 C3HZnF ZFN3 zinc finger nuclease 3 (.1.2.3) AT3G06410 217 / 9e-65 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT3G48440 197 / 3e-57 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT5G63260 192 / 8e-56 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) AT3G12680 131 / 7e-33 C3HZnF HUA1 ENHANCER OF AG-4 1, floral homeotic protein (HUA1) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035330 [exp] 785 / 0 AT1G04990 335 / 1e-111 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Lus10015156 [exp] 458 / 6e-159 AT1G04990 299 / 5e-98 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Lus10020196 [exp] 271 / 1e-85 AT3G02830 510 / 0.0 zinc finger protein 1 (.1) Lus10026996 [exp] 268 / 7e-85 AT3G02830 508 / 3e-180 zinc finger protein 1 (.1) Lus10031528 [exp] 260 / 9e-84 AT1G04990 204 / 2e-63 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Lus10013476 [exp] 218 / 2e-65 AT2G47850 532 / 0.0 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2.3) Lus10007941 [exp] 213 / 2e-63 AT2G47850 524 / 0.0 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2.3) Lus10034620 [exp] 209 / 9e-63 AT2G47850 479 / 2e-168 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2.3) Lus10033962 [exp] 209 / 1e-61 AT5G18550 456 / 7e-158 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G159500 [exp] 512 / 8e-180 AT1G04990 312 / 6e-103 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Potri.002G223700 [exp] 509 / 1e-178 AT1G04990 340 / 8e-114 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Potri.013G086800 [exp] 271 / 1e-85 AT3G02830 542 / 0.0 zinc finger protein 1 (.1) Potri.019G053200 [exp] 264 / 4e-83 AT3G02830 527 / 0.0 zinc finger protein 1 (.1) Potri.010G022500 [exp] 227 / 1e-68 AT5G18550 422 / 7e-145 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.008G215700 [exp] 218 / 7e-65 AT5G18550 397 / 8e-135 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.012G092500 [exp] 194 / 3e-56 AT5G63260 362 / 2e-121 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Potri.015G089100 [exp] 189 / 4e-54 AT5G63260 373 / 9e-126 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Potri.010G176300 [exp] 159 / 9e-43 AT3G12680 578 / 0.0 ENHANCER OF AG-4 1, floral homeotic protein (HUA1) (.1) Potri.008G080300 [exp] 157 / 6e-42 AT3G12680 544 / 0.0 ENHANCER OF AG-4 1, floral homeotic protein (HUA1) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0537 [flax] [poplar] CCCH_zf PF00642 [flax] [poplar] zf-CCCH Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Representative CDS sequence Show only first row Show all	>Lus10029988 pacid=23159718 polypeptide=Lus10029988 locus=Lus10029988.g ID=Lus10029988.BGIv1.0 annot-version=v1.0 ATGCCAGATACTAGCACTAACAACAGTCAGCAGACGAAGAACAACAATGCTGGGCCGAATCAATCCTCTGATAATATTGAAGAAGCAATTAGAAGGCTGA AGATCCATGATGATCAGGAGAAAGGAGGAGGTGGTGGTGATGTGAATGATTCTGGTCCGTATCCGGATCGACCCGGTGAACCGGACTGTGTGTATTACTT GAGGAATGGAGTTTGTGGCTATGGCGTTAATTGCCGCTATAATCACCCACAGTATGCTGCACAGGTGACAAAGGGTACGCAGCTTAAAGAGGAGCTTCCT GAGCGAATTGGAGAGCCTGATTGTGGGTATTATCTGAAAACAGGAACTTGCAAGTATGGTTCGACGTGTAAATATCATCACCCGAAGGACAGGAATGGTG CGGGACCGGTCTCGTACAACCTTCTTGGTCTTCCTATGAGACAGGTACACTTGACTAAAGCAAATAAACCTTATGAATCATCCGAAATCCGGAGTGAGGA GCTCACAGTTGTTGTTCTGTTCAATCAGGATGAAAAATCATGCCCTTACTACATGCGTACTGGAGTGTGCAAATTCGGAGGTGCTTGCAAGTTTCATCAC CCTCAACCTGCATCACTTGAAGCCGGGGTTCCTCTTGCTGGCCTCTCTACTTATGGATCGACGGGTTCATCGTTGATCCCGACTGCTGGTTTACCATATG TTGGTGGACTTCCAACTTGGTCCATGCCAAGAGTACCATATATGCCAGCTCCACGCCTTGAAACTCCGCAGGCATTTGCTCCCCTTTATATCTCTCCTTC CCAAGGCATTCCTCCTCCTGCACAGGGCTGGAACACTTATGTGGGAAACTTAAGCCCGATGTCTTCTCCTAGCATCTTGGGATCGAATCTAGTTTTCAAC TCCAGGAACCATGACTCAGCTCCTCCCAATGGGCAAATCCATTTGATGTCCTCCCCACTTACCTCTAATCTTCCTCAAAGGCCTGATCAACCAGAATGCC GACACTTCATGAACACCGGAACTTGCAAATACGGATCCGACTGCAAGTACCATCACCCAAAGGAGAGAACTGTTCATCAGCTCGCAACAAATCCAGCAGC CCCTCTCGGGCTCCCCTCTCGACCGGGTCAGGCTCTATGTTCCAACTACATTACATATGGCATCTGCAAATTCGGCTCCAACTGCAGATACGATCACCCT TTCACCGGATACCCTTACAGCTACAGCTTAACCGTTCCTCCGTTATCCGTGCTGGACCCTTCCATGGTAACTTATCCGCCTAGAATGTCCGAACCTCCTC TGACTGCACCACAGACAAAAGTTTACTACAATAACAACGGCGCAAGAAACACGAAACATCAGTACCAGATGAATGCAGGTACCAATACTGAGAAGACAAT TGTTGCTACTACTACGACTACTCCTCCGTCAGACGAAGCTACTGACACGACTGCCGATCCTTCGCCTCCGCCACACTCCTCGTCCAAGGCTTCCTCAGAG GCTTCTCACGATTGA
AA sequence Show only first row Show all	>Lus10029988 pacid=23159718 polypeptide=Lus10029988 locus=Lus10029988.g ID=Lus10029988.BGIv1.0 annot-version=v1.0 MPDTSTNNSQQTKNNNAGPNQSSDNIEEAIRRLKIHDDQEKGGGGGDVNDSGPYPDRPGEPDCVYYLRNGVCGYGVNCRYNHPQYAAQVTKGTQLKEELP ERIGEPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSYNLLGLPMRQVHLTKANKPYESSEIRSEELTVVVLFNQDEKSCPYYMRTGVCKFGGACKFHH PQPASLEAGVPLAGLSTYGSTGSSLIPTAGLPYVGGLPTWSMPRVPYMPAPRLETPQAFAPLYISPSQGIPPPAQGWNTYVGNLSPMSSPSILGSNLVFN SRNHDSAPPNGQIHLMSSPLTSNLPQRPDQPECRHFMNTGTCKYGSDCKYHHPKERTVHQLATNPAAPLGLPSRPGQALCSNYITYGICKFGSNCRYDHP FTGYPYSYSLTVPPLSVLDPSMVTYPPRMSEPPLTAPQTKVYYNNNGARNTKHQYQMNAGTNTEKTIVATTTTTPPSDEATDTTADPSPPPHSSSKASSE ASHD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04990	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10029988 [exp]	0	1
AT5G26670			Pectinacetylesterase family pr...		Lus10010084 [exp]	2.0	0.8293
AT3G54810	GATA	GATA8, BME3, BM...	GATA TRANSCRIPTION FACTOR 8, B...		Lus10009227 [exp]	3.5	0.8200
AT1G04990	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10035330 [exp]	4.2	0.8193
AT5G03330			Cysteine proteinases superfami...		Lus10023019 [exp]	4.9	0.7912
AT3G55950		CCR3, ATCRR3	CRINKLY4 related 3 (.1)		Lus10028285 [exp]	5.7	0.7731
AT4G31080			Protein of unknown function (D...		Lus10009547 [exp]	9.5	0.7983
AT1G67970	HSF	AT-HSFA8	heat shock transcription facto...		Lus10003707 [exp]	10.8	0.8007
AT3G24715			Protein kinase superfamily pro...		Lus10038160 [exp]	13.7	0.7772
AT4G18020	GARP	APRR2	PSEUDO-RESPONSE REGULATOR 2, C...		Lus10003013 [exp]	13.9	0.7131
AT5G67470		ATFH6	ARABIDOPSIS FORMIN HOMOLOG 6, ...		Lus10025195 [exp]	14.5	0.7826

Compare expression of checked genes

Lus10029988 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.