Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32940 920 / 0 AGO6 ARGONAUTE 6, Argonaute family protein (.1) AT5G21150 904 / 0 AGO9 ARGONAUTE 9, Argonaute family protein (.1) AT2G27040 881 / 0 OCP11, AGO4 OVEREXPRESSOR OF CATIONIC PEROXIDASE 11, ARGONAUTE 4, Argonaute family protein (.1.2) AT5G21030 785 / 0 PAZ domain-containing protein / piwi domain-containing protein (.1) AT2G27880 437 / 4e-138 AGO5 ARGONAUTE 5, Argonaute family protein (.1) AT5G43810 437 / 4e-138 PNH, ZLL, AGO10 ZWILLE, PINHEAD, ARGONAUTE 10, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2) AT1G48410 426 / 2e-133 AGO1 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) AT1G69440 325 / 3e-96 ZIP, AGO7 ZIPPY, ARGONAUTE7, Argonaute family protein (.1) AT1G31280 289 / 3e-83 AGO2 argonaute 2, Argonaute family protein (.1) AT1G31290 276 / 5e-78 AGO3 ARGONAUTE 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035331 [exp] 1418 / 0 AT2G32940 1080 / 0.0 ARGONAUTE 6, Argonaute family protein (.1) Lus10015155 [exp] 1188 / 0 AT2G32940 1069 / 0.0 ARGONAUTE 6, Argonaute family protein (.1) Lus10026750 [exp] 907 / 0 AT5G21150 1253 / 0.0 ARGONAUTE 9, Argonaute family protein (.1) Lus10025537 [exp] 775 / 0 AT5G21030 1234 / 0.0 PAZ domain-containing protein / piwi domain-containing protein (.1) Lus10017983 [exp] 448 / 3e-140 AT1G48410 1602 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Lus10041978 [exp] 446 / 2e-139 AT1G48410 1579 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Lus10039386 [exp] 435 / 1e-138 AT5G43810 1647 / 0.0 ZWILLE, PINHEAD, ARGONAUTE 10, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2) Lus10006627 [exp] 436 / 2e-137 AT5G43810 1658 / 0.0 ZWILLE, PINHEAD, ARGONAUTE 10, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2) Lus10031331 [exp] 430 / 2e-134 AT1G48410 1621 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G159400 [exp] 1111 / 0 AT2G32940 1169 / 0.0 ARGONAUTE 6, Argonaute family protein (.1) Potri.008G010500 [exp] 959 / 0 AT2G27040 1281 / 0.0 OVEREXPRESSOR OF CATIONIC PEROXIDASE 11, ARGONAUTE 4, Argonaute family protein (.1.2) Potri.001G219700 [exp] 958 / 0 AT2G27040 1403 / 0.0 OVEREXPRESSOR OF CATIONIC PEROXIDASE 11, ARGONAUTE 4, Argonaute family protein (.1.2) Potri.016G024200 [exp] 910 / 0 AT2G27040 1246 / 0.0 OVEREXPRESSOR OF CATIONIC PEROXIDASE 11, ARGONAUTE 4, Argonaute family protein (.1.2) Potri.006G025900 [exp] 910 / 0 AT2G27040 1236 / 0.0 OVEREXPRESSOR OF CATIONIC PEROXIDASE 11, ARGONAUTE 4, Argonaute family protein (.1.2) Potri.010G081300 [exp] 434 / 5e-137 AT5G43810 1663 / 0.0 ZWILLE, PINHEAD, ARGONAUTE 10, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2) Potri.008G158800 [exp] 432 / 3e-136 AT5G43810 1688 / 0.0 ZWILLE, PINHEAD, ARGONAUTE 10, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2) Potri.015G029000 [exp] 432 / 1e-135 AT1G48410 1549 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Potri.012G037100 [exp] 430 / 1e-134 AT1G48410 1560 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Potri.006G118600 [exp] 417 / 5e-131 AT2G27880 1068 / 0.0 ARGONAUTE 5, Argonaute family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0638 [flax] [poplar] PAZ PF02170 [flax] [poplar] PAZ PAZ domain CL0219 [flax] [poplar] RNase_H PF02171 [flax] [poplar] Piwi Piwi domain CL0219 [flax] [poplar] PF08699 [flax] [poplar] ArgoL1 Argonaute linker 1 domain
Representative CDS sequence Show only first row Show all	>Lus10029989 pacid=23159640 polypeptide=Lus10029989 locus=Lus10029989.g ID=Lus10029989.BGIv1.0 annot-version=v1.0 ATGGACGCTCACCTACGCCAGCCTTTTCCTCTTCCTATTGGCACTAAATATAAATATAGCGGGAATTTCTTCCTCGAAAACTTGCACAGGGCGCCTCTTT CCCTATTCACTCTCTCGTTTTCCCTGAGCTCACCGGAGCTGCCGAGGACGAAGAGAAATAGAAGAAGCCTCCGTCGACAAAAACGAAACCCTAGAATTCA GCACTTTCTATTCGCTGGTAAGTCTCCGATCATCTTCTTTGCTTCACAATGCAGCTGCTCTTTCTTTGTTATTTCAGCGGAATCTTCTCGAATGCAGCTT GGCTCGAAATCGTGTTCAACGAAAACGCTTGTGCTGGTTTATTTTGCGAAATCTTACTCAGTGAATATGGCTAAAGAAGTGAACCAATCTCCTCCGTTAC CCCCACCACCTCCAGTGCCATCTAGTGCAAATCCTGAGCTGGTAACCAAAACCGTGGAACATGCAGACCTTCCGAAACTCTCTATTATGAGCAGAAAGGG ACGCGGGACGCAGGGGCAACACATTACTTTGCTTACAAACCACTTCAAAGTCTCCGTTGGTGTTGAAGATGCAGTGTTCTACCAGTATTCTCCCGTAGTT CTTGCTCTCAAGGGAAGTGAGGCAGGCAATAGTGACATTCAGGATGCGCTTAGAGTATTAGATATAATCCTAAGGCAGCAGGCAGCGAGCAGGGGATGCC TTTTGGTAAGGCAGTCGTTCTTTCATGATGATTCAAGAATGTACACTGACGTTGGCCACGGTGTCAGCGGCCTTAGAGGTTTCCATTCTAGCTTCCGTAC CACTCATGGTGGCTTGTCACTGAATATAGATGTCTCCACGACTATGGTCCTAACCCCTGGACCAGTCATTGACTTTCTGTTAGTGAATCAGAATGTTAGA GAACCTAGAGATATTGACTGGGACAAGGCTAGGAGGATGTTGAAGAACTTGAGGATCAAGACAACACACAACAACAGGGAATTTAAAATTATTGGTTTGA GCGAGAGGCCATGCAGGCAGCAACTTTTTTCCATGAAAGCGAGGAACGGTGCTGGTGCTGGTGGGGAGTCAGAGTTCATAGAAATTACCGTTTATGATTA TTATGCTAAACATTGTGCCATAGAACTAAAATATTCAGCACACTTTCCCTGCCTTAATGTGGGCAAGCCGAAAAAGCCAGTTTATCTACCCATCGAGCTT TGCTCATTGACTTCACTCCAACGGTACACGAAAGCGTTATCTTCGATGCAGAGAGCATCTTTGGTTGAAAAATCCAGACAGAAACCTCAGGACAGAATAA GAACCGTCACCGATGCCATGAGAAAATATCGTTATGACGAAGATCCGCTGCTTCTTGAATGTGGGATATCGTTAGAAAAGAATTTGACACCAGTCACTGG CCGGGTTCTTAAAACCCCCAAGTTGAAGGTTGGTAAAGGTGAGGACTGCTTCCCAAATAATGGCCGTTGGAATTTCAACAACAAGACTCTTCTGAATGGG AAGAGTATTGAGCGGTGGGCTATCGTCAACTTTAGTGCTCAATGTGATACTAGTCGCCTGGCTCGAGAACTGATCGCTTGCGCAAAGAAAAAGGGCATGG AAATTGAAGGTCCCAAGAGTTTAATTGAAGAACACCCTCAGCTTAGAAGAAGCAGTCCTCTTGATAGAGTGGAAAGCATGTTTGAGCTAGTCCGAGCTAA ACTGCCCGGTCCCCCACAGTTTCTCCTGTGTCTCTTGCCTCAGCGAAAGAATTCTGAAATTTATGGGCCGTGGAAGAAGAAATGTCTAAGCGATTTTGGC ATTGTTACACAGTGCATATCTCCACCACGCCTTATCAAGGATCAATACCTTACCAATGTGCTTCTGAAGATTAATTCTAAGCTTGGAGGAATAAATTCCA TGTTGGAGATTGAGCATTCTCGATCCATTCCCTTGATAACACAAACTCCGACAATGATTTTGGGGATGGATGTGTCGCATGGATCTCCTGGTCGGTCTGA TGTTCCATCTGTTGCAGCGGTAGTCGGATCCATAGAATGGCCGTATGTTACCAAGTATAGAGCATCTGTCAGAACCCAGTCCCCTAAGGTGGAGATGATT GATGCTCTTTACAACCCTTCTCCAAATGGCACAGATGAAGGCATCATGAGGGAATTGTTCAGGGAATTCTATCGGTCAAGTGGCCATAAACCAAGGCAAA TTATTATTTTCAGGGATGGGGTAAGTGAATCGCAGTTCAATCAGGTGTTGAATATCGAACTGCCCCAGATTATCAAGGCGTACCACAATCTCGGCGAGGT TGACGTTCCAAAGTTCACAGTGATAATAGCACAGAAGAATCACCACACCAAGCTATTCAGGACTGAAGGCAACGAAAATGTTCCTCCTGGCACGGTTGTG GACACGACTGTTGTGCACCCCAGAAACTACGACTTCTACATGTGTGCACACAATGGTGCAATCGGCACGTCAAGACCAGCACATTATCATGTCCTGATTG ACGAGATAGGCTTCACTCCCGACGAACTACAGAACCTCATCCACTCTCTCTCCTATGTCTACCAGAGGAGCACAACAGCCATCTCCATTGTTGCTCCGGT CTGCTACGCCCATCTAGCAGCAGCCCAGATGAGCCAGTTCATCAAGTTCGATGACTTGTCAGAGAAGTCATCCGAAGTCATGACATCTGCCGGAGCCCCT GCTGTCCCCGAACTTCCTAAGCTACACGAGAACGTCGAGGCTTCGATGTTCTTCTGCTGA
AA sequence Show only first row Show all	>Lus10029989 pacid=23159640 polypeptide=Lus10029989 locus=Lus10029989.g ID=Lus10029989.BGIv1.0 annot-version=v1.0 MDAHLRQPFPLPIGTKYKYSGNFFLENLHRAPLSLFTLSFSLSSPELPRTKRNRRSLRRQKRNPRIQHFLFAGKSPIIFFASQCSCSFFVISAESSRMQL GSKSCSTKTLVLVYFAKSYSVNMAKEVNQSPPLPPPPPVPSSANPELVTKTVEHADLPKLSIMSRKGRGTQGQHITLLTNHFKVSVGVEDAVFYQYSPVV LALKGSEAGNSDIQDALRVLDIILRQQAASRGCLLVRQSFFHDDSRMYTDVGHGVSGLRGFHSSFRTTHGGLSLNIDVSTTMVLTPGPVIDFLLVNQNVR EPRDIDWDKARRMLKNLRIKTTHNNREFKIIGLSERPCRQQLFSMKARNGAGAGGESEFIEITVYDYYAKHCAIELKYSAHFPCLNVGKPKKPVYLPIEL CSLTSLQRYTKALSSMQRASLVEKSRQKPQDRIRTVTDAMRKYRYDEDPLLLECGISLEKNLTPVTGRVLKTPKLKVGKGEDCFPNNGRWNFNNKTLLNG KSIERWAIVNFSAQCDTSRLARELIACAKKKGMEIEGPKSLIEEHPQLRRSSPLDRVESMFELVRAKLPGPPQFLLCLLPQRKNSEIYGPWKKKCLSDFG IVTQCISPPRLIKDQYLTNVLLKINSKLGGINSMLEIEHSRSIPLITQTPTMILGMDVSHGSPGRSDVPSVAAVVGSIEWPYVTKYRASVRTQSPKVEMI DALYNPSPNGTDEGIMRELFREFYRSSGHKPRQIIIFRDGVSESQFNQVLNIELPQIIKAYHNLGEVDVPKFTVIIAQKNHHTKLFRTEGNENVPPGTVV DTTVVHPRNYDFYMCAHNGAIGTSRPAHYHVLIDEIGFTPDELQNLIHSLSYVYQRSTTAISIVAPVCYAHLAAAQMSQFIKFDDLSEKSSEVMTSAGAP AVPELPKLHENVEASMFFC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G32940		AGO6	ARGONAUTE 6, Argonaute family ...		Lus10029989 [exp]	0	1
AT2G32940		AGO6	ARGONAUTE 6, Argonaute family ...		Lus10035331 [exp]	2.8	0.9159
AT3G03590			SWIB/MDM2 domain superfamily p...		Lus10005667 [exp]	3.5	0.9069
AT4G37090			unknown protein		Lus10000742 [exp]	11.4	0.8796
AT1G73620			Pathogenesis-related thaumatin...		Lus10009058 [exp]	11.5	0.9155
AT3G18600			P-loop containing nucleoside t...		Lus10027240 [exp]	12.4	0.8804
AT3G18800			unknown protein		Lus10020872 [exp]	13.9	0.9055
AT3G02820			zinc knuckle (CCHC-type) famil...		Lus10012910 [exp]	19.7	0.8985
AT5G65360			Histone superfamily protein (....		Lus10025439 [exp]	22.4	0.8981
AT5G48385			FRIGIDA-like protein (.1)		Lus10027765 [exp]	23.7	0.8798
AT2G01630			O-Glycosyl hydrolases family 1...		Lus10013465 [exp]	24.8	0.8895

Compare expression of checked genes

Lus10029989 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.