Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32950 1042 / 0 FUS1, EMB168, DET340, ATCOP1, COP1 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) AT1G53090 350 / 6e-110 SPA4 SPA1-related 4 (.1.2) AT4G11110 345 / 4e-106 SPA2 SPA1-related 2 (.1) AT2G46340 339 / 9e-104 SPA1 SUPPRESSOR OF PHYA-105 1, SPA (suppressor of phyA-105) protein family (.1) AT3G15354 334 / 2e-103 SPA3 SPA1-related 3 (.1) AT5G23730 203 / 5e-59 EFO2, RUP2 REPRESSOR OF UV-B PHOTOMORPHOGENESIS 2, EARLY FLOWERING BY OVEREXPRESSION 2, Transducin/WD40 repeat-like superfamily protein (.1) AT5G52250 188 / 3e-53 EFO1, RUP1 REPRESSOR OF UV-B PHOTOMORPHOGENESIS 1, EARLY FLOWERING BY OVEREXPRESSION 1, Transducin/WD40 repeat-like superfamily protein (.1) AT4G18900 77 / 2e-14 Transducin/WD40 repeat-like superfamily protein (.1) AT5G08390 73 / 5e-13 Transducin/WD40 repeat-like superfamily protein (.1) AT5G58230 72 / 5e-13 MSI1, MEE70, ATMSI1 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035332 [exp] 1279 / 0 AT2G32950 1088 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10043323 [exp] 355 / 6e-112 AT3G15354 906 / 0.0 SPA1-related 3 (.1) Lus10019475 [exp] 350 / 2e-109 AT3G15354 992 / 0.0 SPA1-related 3 (.1) Lus10033942 [exp] 244 / 1e-69 AT4G11110 766 / 0.0 SPA1-related 2 (.1) Lus10032358 [exp] 204 / 2e-55 AT4G11110 784 / 0.0 SPA1-related 2 (.1) Lus10027454 [exp] 144 / 6e-39 AT5G23730 248 / 2e-81 REPRESSOR OF UV-B PHOTOMORPHOGENESIS 2, EARLY FLOWERING BY OVEREXPRESSION 2, Transducin/WD40 repeat-like superfamily protein (.1) Lus10005742 [exp] 119 / 2e-29 AT5G52250 226 / 3e-72 REPRESSOR OF UV-B PHOTOMORPHOGENESIS 1, EARLY FLOWERING BY OVEREXPRESSION 1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10019476 [exp] 122 / 7e-29 AT3G15354 624 / 0.0 SPA1-related 3 (.1) Lus10027848 [exp] 77 / 7e-15 AT4G35050 585 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G159300 [exp] 1087 / 0 AT2G32950 1091 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.004G002700 [exp] 922 / 0 AT2G32950 832 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.011G021700 [exp] 715 / 0 AT2G32950 686 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.011G119500 [exp] 358 / 4e-112 AT3G15354 982 / 0.0 SPA1-related 3 (.1) Potri.003G137100 [exp] 362 / 1e-111 AT4G11110 1016 / 0.0 SPA1-related 2 (.1) Potri.001G399600 [exp] 355 / 9e-111 AT3G15354 1003 / 0.0 SPA1-related 3 (.1) Potri.014G095300 [exp] 354 / 4e-109 AT2G46340 846 / 0.0 SUPPRESSOR OF PHYA-105 1, SPA (suppressor of phyA-105) protein family (.1) Potri.001G094500 [exp] 348 / 6e-107 AT4G11110 1016 / 0.0 SPA1-related 2 (.1) Potri.012G140200 [exp] 201 / 4e-58 AT5G23730 427 / 3e-149 REPRESSOR OF UV-B PHOTOMORPHOGENESIS 2, EARLY FLOWERING BY OVEREXPRESSION 2, Transducin/WD40 repeat-like superfamily protein (.1) Potri.015G143200 [exp] 200 / 5e-58 AT5G23730 395 / 2e-137 REPRESSOR OF UV-B PHOTOMORPHOGENESIS 2, EARLY FLOWERING BY OVEREXPRESSION 2, Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10029990 pacid=23159758 polypeptide=Lus10029990 locus=Lus10029990.g ID=Lus10029990.BGIv1.0 annot-version=v1.0 ATGAAGGAGGCATCGAGCGGAGCGGTATGTCCAGATGTAAAGCTCGAGCTCAGAGCTTCTTCATCCTCCGCCACCGCAGCAGCAGCACCGCCGTCTCCTG AGCCGTCGGCGAGGCCTGCTGACGAAGCAGCTGGCGTCTCGGAGCTAGACAAGGACTTGCTGTGCCCGATTTGTATGCAGATTATCAAAGACGCGTTCCT CACAGCTTGTGGCCATAGCTTCTGCCACACGTGTATCATCACTCACCTCCGGAACAAGAGCGACTGCCCTTGCTGCGGCCATTACCTTACTAGCAACCAG CTCTTTCCTAATTTCTTACTCCAGAAGCTTCTGAAGAAAGCTTCGGCTAGTCAGATGTCGAGAAATGCGACTCCGATGGAGAAGTTTCGGCAGGCTCTGC AACAGGGATGTGAAGTGTCAATTAAGGAGGTAGACTCTCTTTTGTCTCTCCTTGCAGAGAAGAAAAGAAAAATGGAACAAGAGGAAGCTGAAAGAAATAT GCAAGTACTGCTAGATTTCCTGCACTACTTGCGTAAGCAAAAAGTTGATGAATTGAATGAGCTCCGGACGGACCTCCAGTATATTAAGGAAGACATAGAT GCTGTTGAGAGACATAGAATCGAGTTGTATCGTGCTAGAGACAGGTATTCAGTGAAGCTGCGAATGCTTGATGATCCCATGGCAGGAAAACCATGGTCAA CCATGGATAAGAACCATGGTAGCATGATGAGCAGTTCTTTCAGTTCAAGAGGCGGGATGGCAATGGGGAATGTGGCTACCAAGAAAACCGACGGAAAGTC ACAACTAAGTTCTCAGGGTTTTCAAAGGAAGGACAGTTTAGGTGGCTCTGACTTACAAAATAACCAGTCAGGGTTATCTGTTATGAGGAAGAAGCGAGTC CATACACAGTTCAATGAACTGCAAGAATGTTATCTTCAAAAGCGTCGCCAGTTTCCGAACCATCCCTCAAATTTTCAAGAAAGGGATAAGAACATCATAC AAAGAGAGGGCTATACTGCTGGTCTTCAAGAGTTTCAATCTGTTCTTAGTACCTTCACTCAGTACAGCCGATTAAGGGTCATTGCTGAGTTGAGACATGA AGACATCTTTCACTCGGTGAACATAGTATCAAGCATAGAGTTTGACCGTGATGATGAGTTGTTTGCCACAGCTGGGGTATCTAGGCGGATCAAAGTGTTT GATTTCGCTTCCGTTTTAAATGAGCCTGCAGACGTGCACTTGCCTGTTGTGGAGATGTCAACTCGTTCCAAACTCAGTTGCTTGAGTTGGAACAAATACG CTAAGAACCATATAGCTAGTAGTGATTATGAGGGGATAGTAACTGTTTGGGATGTGACAACTAGGCAGAGCGTAATGGAATATGAAGAACATGAGAAACG CGCTTGGAGTGTTGATTTTTCTCGCACAGAACCTTCAATGCTTGTTTCTGGTAGTGATGACTGCAAGGTTAAAGTTTGGTGTACAAAACAAGAAGCCAGT GTTCTCAACATTGACATGAAAGCAAACATCTGCTGTGTCAAGTATAATCCTGGATCTAGCAATTTCATCGCGGTTGGCTCAGCAGACCATCACATCCATT ACTATGATTTAAGAAATATCAGCCAGCCACTCCACGTGTTTAGTGGGCACAAAAAAGCCGTTTCGTATGTCAAGTTTTTGTCGAACAATGAGCTTGCCTC GGCATCCACAGACAGCACACTACGGTTATGGGACGTACAAGAGAATTTACCAGTCCGCACGTTTAGGGGCCACACCAACGAAAAGAACTTTGTCGGTCTC ACCGTAAACAGCGAGTACATCGCATGTGGCAGCGAGACAAACGACGTCTTCGTCTACCACAAGGAGATCTCCAAACCCGTTACATCCCATCGATTCGGTT CCTCCGAAATGGATGATCCCGACGAAGATGCAGGGTCGTATTTCATCAGCGCCGTGTGCTGGAAAAGCGACAGTCCTACGATGCTGACAGCAAACAGCCA AGGCACGATCAAAGTACTAGTTCTCGGAGCTTAG
AA sequence Show only first row Show all	>Lus10029990 pacid=23159758 polypeptide=Lus10029990 locus=Lus10029990.g ID=Lus10029990.BGIv1.0 annot-version=v1.0 MKEASSGAVCPDVKLELRASSSSATAAAAPPSPEPSARPADEAAGVSELDKDLLCPICMQIIKDAFLTACGHSFCHTCIITHLRNKSDCPCCGHYLTSNQ LFPNFLLQKLLKKASASQMSRNATPMEKFRQALQQGCEVSIKEVDSLLSLLAEKKRKMEQEEAERNMQVLLDFLHYLRKQKVDELNELRTDLQYIKEDID AVERHRIELYRARDRYSVKLRMLDDPMAGKPWSTMDKNHGSMMSSSFSSRGGMAMGNVATKKTDGKSQLSSQGFQRKDSLGGSDLQNNQSGLSVMRKKRV HTQFNELQECYLQKRRQFPNHPSNFQERDKNIIQREGYTAGLQEFQSVLSTFTQYSRLRVIAELRHEDIFHSVNIVSSIEFDRDDELFATAGVSRRIKVF DFASVLNEPADVHLPVVEMSTRSKLSCLSWNKYAKNHIASSDYEGIVTVWDVTTRQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVKVWCTKQEAS VLNIDMKANICCVKYNPGSSNFIAVGSADHHIHYYDLRNISQPLHVFSGHKKAVSYVKFLSNNELASASTDSTLRLWDVQENLPVRTFRGHTNEKNFVGL TVNSEYIACGSETNDVFVYHKEISKPVTSHRFGSSEMDDPDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLGA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G32950		FUS1, EMB168, D...	FUSCA 1, EMBRYO DEFECTIVE 168,...		Lus10029990 [exp]	0	1
AT2G32950		FUS1, EMB168, D...	FUSCA 1, EMBRYO DEFECTIVE 168,...		Lus10035332 [exp]	1.0	0.9780
AT2G46790		TL1, APRR9	TOC1-LIKE PROTEIN 1, Arabidops...		Lus10015571 [exp]	3.9	0.8705
AT1G16720		HCF173	high chlorophyll fluorescence ...		Lus10033322 [exp]	4.7	0.8839
AT4G01660		ATABC1, ATATH10...	ABC transporter 1 (.1)		Lus10010085 [exp]	4.7	0.8325
AT4G22120			ERD (early-responsive to dehyd...		Lus10002996 [exp]	6.3	0.8534
AT1G16720		HCF173	high chlorophyll fluorescence ...		Lus10034781 [exp]	11.7	0.8553
AT3G56140			Protein of unknown function (D...		Lus10010224 [exp]	12.0	0.8497
AT4G37820			unknown protein		Lus10019253 [exp]	15.3	0.8225
AT3G63520		ATNCED1, ATCCD1...	carotenoid cleavage dioxygenas...		Lus10029512 [exp]	16.7	0.8441
AT5G24470		APRR5	pseudo-response regulator 5 (....		Lus10032934 [exp]	18.3	0.7759

Compare expression of checked genes

Lus10029990 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.