Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05010 454 / 7e-162 ACO4, EAT1, EFE ethylene forming enzyme, ethylene-forming enzyme (.1) AT1G62380 438 / 9e-156 ATACO2, ACO2 ACC oxidase 2 (.1) AT1G12010 432 / 2e-153 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G77330 276 / 7e-92 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G19590 272 / 2e-90 ATACO1, ACO1 ACC oxidase 1 (.1) AT1G78550 166 / 9e-49 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G05600 166 / 2e-48 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G11180 166 / 4e-48 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT5G24530 161 / 5e-47 DMR6 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G10490 160 / 2e-46 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035334 [exp] 606 / 0 AT1G05010 495 / 6e-178 ethylene forming enzyme, ethylene-forming enzyme (.1) Lus10015153 [exp] 521 / 0 AT1G05010 501 / 1e-180 ethylene forming enzyme, ethylene-forming enzyme (.1) Lus10031530 [exp] 520 / 0 AT1G05010 498 / 3e-179 ethylene forming enzyme, ethylene-forming enzyme (.1) Lus10028678 [exp] 286 / 2e-95 AT1G77330 435 / 1e-154 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10000857 [exp] 285 / 4e-95 AT1G77330 440 / 2e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10008564 [exp] 281 / 1e-93 AT2G19590 423 / 6e-150 ACC oxidase 1 (.1) Lus10005037 [exp] 164 / 2e-47 AT3G11180 471 / 3e-166 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10011980 [exp] 157 / 5e-45 AT1G17020 382 / 1e-132 senescence-related gene 1 (.1) Lus10004808 [exp] 157 / 5e-45 AT5G05600 457 / 5e-162 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G159000 [exp] 493 / 2e-177 AT1G05010 464 / 8e-166 ethylene forming enzyme, ethylene-forming enzyme (.1) Potri.002G224100 [exp] 485 / 3e-174 AT1G05010 440 / 2e-156 ethylene forming enzyme, ethylene-forming enzyme (.1) Potri.011G020900 [exp] 472 / 7e-169 AT1G05010 473 / 1e-169 ethylene forming enzyme, ethylene-forming enzyme (.1) Potri.004G003000 [exp] 467 / 4e-167 AT1G05010 467 / 6e-167 ethylene forming enzyme, ethylene-forming enzyme (.1) Potri.006G151600 [exp] 291 / 6e-98 AT2G19590 462 / 2e-165 ACC oxidase 1 (.1) Potri.005G182700 [exp] 291 / 7e-98 AT1G77330 461 / 4e-165 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.002G078600 [exp] 289 / 5e-97 AT1G77330 455 / 1e-162 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.008G069300 [exp] 174 / 2e-51 AT5G05600 528 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G188000 [exp] 170 / 5e-50 AT5G05600 511 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.006G101100 [exp] 168 / 3e-49 AT5G05600 462 / 1e-163 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10029992 pacid=23159663 polypeptide=Lus10029992 locus=Lus10029992.g ID=Lus10029992.BGIv1.0 annot-version=v1.0 ATGGAGTTCCCAATCATCAACATGGAGAAGCTCGCCGGCAACGAGAGATCCGCCACCATGGCCAAGATCAACGACGCCTGCGAGAACTGGGGCTTCTTTG AGATTCTGAACCATCCGATTCCGGTGGAGCTACTCGACACGGTGGAGGCGATGACAAAAGAGCATTACAGGAAATGCTTGGAGCAGAGGTTCAAGGAGCT GGTGAAGAGCAAGGGGCTCGAAGAGCTCGATTCCGAGATCAAGGACATGGACTGGGAGAGCACCTTCTACCTCAAGCACCTTCCCGAATCGAACATCAAT GAGGTCCCCGATCTCGAGGACCGATACCGGGAGGTGATGAAGGACTTTGCCGGTAGGCTTGAGAAGCTGGCGGAGGAGCTTCTTGATCTGCTGTGCGAGA ATCTCGGGCTCGAGAAGGGCTACTTGAAGAAGGCGTTTTATGGATCGAAAGGGTTGCCCACTTTCGGTACGAAAGTGAGCAACTACCCACCTTGTCCGAA GCCCGATCTGATCAAGGGGCTTCGGGCACACACCGATGCTGGCGGGATCATCTTGTTGTTTCAGGATGATAAGGTGAGCGGCCTTCAGCTTTTGAAGGAT GGGGAGTGGGTTGATGTGCCGCCTATGCGTCACTCGATCGTCATTAACCTCGGTGACCAGATTGAGGTGATTACCAATGGGAGGTATAAGAGCGTGGAGC ATAGGGTGGTGGCGCAAACAGACGGGACCAGGATGTCCATTGCATCGTTTTACAACCCTGGAAATGACGCGGTGATCTACCCTGCACCTCAGCTGCTCGA GGGAGAGTCGGAGACAGAGAAGAAGAGCATTACCTACCCGAAATTCGTGTTTGATGACTACATGAAGCTGTATGCCGGGCTGAAGTTTGAGGCCAAGGAG CCAAGGTTTGAGGCCATGAAGTCTAACGTGAAGCTGAGTCCAAGTGCTGTCATAGTTGAGACCTTTTAA
AA sequence Show only first row Show all	>Lus10029992 pacid=23159663 polypeptide=Lus10029992 locus=Lus10029992.g ID=Lus10029992.BGIv1.0 annot-version=v1.0 MEFPIINMEKLAGNERSATMAKINDACENWGFFEILNHPIPVELLDTVEAMTKEHYRKCLEQRFKELVKSKGLEELDSEIKDMDWESTFYLKHLPESNIN EVPDLEDRYREVMKDFAGRLEKLAEELLDLLCENLGLEKGYLKKAFYGSKGLPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKD GEWVDVPPMRHSIVINLGDQIEVITNGRYKSVEHRVVAQTDGTRMSIASFYNPGNDAVIYPAPQLLEGESETEKKSITYPKFVFDDYMKLYAGLKFEAKE PRFEAMKSNVKLSPSAVIVETF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05010		ACO4, EAT1, EFE	ethylene forming enzyme, ethyl...		Lus10029992 [exp]	0	1
AT1G07400			HSP20-like chaperones superfam...		Lus10016457 [exp]	1.7	0.9114
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Lus10011816 [exp]	3.0	0.8200
					Lus10026314 [exp]	4.5	0.8595
AT1G04560			AWPM-19-like family protein (....		Lus10014456 [exp]	4.9	0.8337
AT1G67570			Protein of unknown function (D...		Lus10043011 [exp]	8.1	0.8368
AT1G12310			Calcium-binding EF-hand family...		Lus10004332 [exp]	8.2	0.8462
AT1G53540			HSP20-like chaperones superfam...		Lus10040830 [exp]	9.3	0.8586
AT3G63095			Tetratricopeptide repeat (TPR)...		Lus10012373 [exp]	12.8	0.6716
AT3G07470			Protein of unknown function, D...		Lus10029538 [exp]	14.5	0.8182
					Lus10042355 [exp]	15.5	0.8233

Compare expression of checked genes

Lus10029992 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.