Plant FIBer expression Database

Lus10029994 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G31340 824 / 0 EMB1381 embryo defective 1381 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035336
[exp]
1158 / 0 AT2G31340 827 / 0.0 embryo defective 1381 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G224300
[exp]
937 / 0 AT2G31340 863 / 0.0 embryo defective 1381 (.1)
PFAM info
Representative CDS sequence
>Lus10029994 pacid=23159778 polypeptide=Lus10029994 locus=Lus10029994.g ID=Lus10029994.BGIv1.0 annot-version=v1.0
ATGGTGCACAAACCATGGAAGATAATCCCAAGACCACTCCTAGAAACGATCCTCAACAACCACGCTCAGCACCACCGCGTCCCTCAGCCTCTCATCATCC
ACGGCCCTCGCGGCGTCGGCAAAACCACCCTCATCCTCGACCGTCTCCTCAACGATTGGAACAAAGCTCCCCACGTCACCGGCTACGTCGACTTCGCCGA
ATCAGTGAAAGAGCATCACCCGAAGCAGGGAAACTCGTTCCCATGGTCGTCCTGGTCGACCTGCGACCCGCCGAAGCTGGCTGATTGCGCGGCTCAGCTG
GAGAATTGCCTGGAATCAATGGCGCATAAGGCGATCCAGCTGGGAAGCATTTCCTCCACTCAGATATTCTCCACCGTAACCAAATGGCACCGTCCTGATA
CATCTCTACGCCGGATCATACTTCAGAACAGTGTAGGTTCCGGTTCCGTTTCGAAATCGAGGAATGCTGTTTCAGAGAAGGTTTCTGGGTCGGTTTTGTG
GGACAGAGCGGTATCTGCACTAACTGCTCAATCAAATGCCAATGAGATTGATAAAGCTTTGAGCTTGGGGGAGAAAGGTAAGAGGAAGTTGTCAGTTGAT
GAGGCTGCTTACTATAGAGAGGCGATGGTTGCGCTGAGGTTGGCTAAAGAGGTTGTTAAAGCGTTGCAGAGGTCGAGGGGTAATGCTATTGCGGATTTGA
ATCGAAGCGGTGGGTTTTCGAGGTCTTTGGCGAATTCGTGTACAGATTGGCCTTGTTTGTTGCTTGAGCTGCTGTCACAGGCTGCAGAGATTGACTACTT
TCAGCCGAAGCTGGTGATGAATAATATTGAAGTGTTGAAGACTGCTTTGCTAACTGATGATACAATGGTGTCCGGAGCGATGTACCATGATAGCCTGATA
TGGAGAATTATTGCGTTGGGTGCCAACGAAAGGTGTCTTCCAGTTATGCTTGTGACATCCGATAGTTACTATTCTTACAGGGCGTTCATGGATTTTGGTT
TTCCAGATATCTTTATCTCTCGAGAGACCTTTGGTTGGTCTCCAAGGGAGGCTGAATTGCACTTGGTTACCGACTACTTCAGCCCGTCAGAGTGGAAGTT
GATAGTTGAAGTGCTTGGCCCGAGTCCTCGACATCTATTTGAACTTTACGCACTCAAGCAAAGCAGCTATTACCAGAAGGTGCTGGAGGACAAGGATAAT
ACATTTGAAGATGTTATTGATGCATATTTAGCTTATCTTCAGATAATGGTTGTAAATCCTGCTATGGATAAAGCTATTGCAATCCTACAAAAGTTTGCTA
AGGATGCTAGAACGGGGAAGATCCCGAAGGACAGACTTCGCTTTGGTTCCCCTTGGAGGCATCCTCCAAAAAAAGATGATCCCACTCAGTCCTCCAAGTG
GGCCAAGCTACAACTGATGGATTTTATCCAGACTCTAGCAAACACTGAATTTGGGGTTAATTATTTAGCTGATTGTAGCTTGGAGGTATTGGATGATCCT
TGCACGGTCGCATTGATTGAGGTTGGATTGCTCTATGCACAACGCGATCCATCATTCATTCGTCCCATTTCTAGGGCAGTTCAACGGTGTCTTGCCAGAT
GGCTTGTGCAGGAGAAGATGCAAATGGATTTAGGGTTCTCGTTCCGATATTCGTGGCAACGGGTCATACGTGGTCGTAGCTATCGCCATCTGATGCTAGA
AGTTGGCTATACTTTTGCATCAGTTGGTAAAAACCCTCCCGGACGCCAATTCGAGGGAAAGATCTCAATTACTGGGAACGAGACTCCCGATATCGCGGCT
CGTGAAAGGAAGCTTCTGAGTTTCGAGTCTCGCAGAAGGTACTGGGAAACAAGCTGA
AA sequence
>Lus10029994 pacid=23159778 polypeptide=Lus10029994 locus=Lus10029994.g ID=Lus10029994.BGIv1.0 annot-version=v1.0
MVHKPWKIIPRPLLETILNNHAQHHRVPQPLIIHGPRGVGKTTLILDRLLNDWNKAPHVTGYVDFAESVKEHHPKQGNSFPWSSWSTCDPPKLADCAAQL
ENCLESMAHKAIQLGSISSTQIFSTVTKWHRPDTSLRRIILQNSVGSGSVSKSRNAVSEKVSGSVLWDRAVSALTAQSNANEIDKALSLGEKGKRKLSVD
EAAYYREAMVALRLAKEVVKALQRSRGNAIADLNRSGGFSRSLANSCTDWPCLLLELLSQAAEIDYFQPKLVMNNIEVLKTALLTDDTMVSGAMYHDSLI
WRIIALGANERCLPVMLVTSDSYYSYRAFMDFGFPDIFISRETFGWSPREAELHLVTDYFSPSEWKLIVEVLGPSPRHLFELYALKQSSYYQKVLEDKDN
TFEDVIDAYLAYLQIMVVNPAMDKAIAILQKFAKDARTGKIPKDRLRFGSPWRHPPKKDDPTQSSKWAKLQLMDFIQTLANTEFGVNYLADCSLEVLDDP
CTVALIEVGLLYAQRDPSFIRPISRAVQRCLARWLVQEKMQMDLGFSFRYSWQRVIRGRSYRHLMLEVGYTFASVGKNPPGRQFEGKISITGNETPDIAA
RERKLLSFESRRRYWETS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G31340 EMB1381 embryo defective 1381 (.1) Lus10029994
[exp]
0 1
AT2G47210 MYB myb-like transcription factor ... Lus10015735
[exp]
9.5 0.8749
AT5G64580 EMB3144 EMBRYO DEFECTIVE 3144, AAA-typ... Lus10020879
[exp]
11.1 0.8728
AT3G46960 RNA helicase, ATP-dependent, S... Lus10017528
[exp]
13.3 0.8787
AT5G49430 WD40/YVTN repeat-like-containi... Lus10037748
[exp]
17.5 0.8775
AT3G19510 HD HAT3.1 Homeodomain-like protein with ... Lus10024826
[exp]
18.2 0.8679
AT2G06990 HEN2 hua enhancer 2, RNA helicase, ... Lus10027599
[exp]
18.5 0.8689
Lus10012794
[exp]
19.3 0.8614
AT5G43100 Eukaryotic aspartyl protease f... Lus10019309
[exp]
24.4 0.8498
AT1G54490 ATXRN4, XRN4, E... ETHYLENE INSENSITIVE 5, ACC IN... Lus10015946
[exp]
25.4 0.8719
AT3G05040 HST1, HST HASTY 1, HASTY, ARM repeat sup... Lus10033845
[exp]
27.6 0.8679

Lus10029994 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.