Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G05810 302 / 5e-96 ARM repeat superfamily protein (.1.2) AT2G45720 121 / 3e-29 ARM repeat superfamily protein (.1.2) AT5G50900 118 / 3e-28 ARM repeat superfamily protein (.1) AT1G61350 104 / 9e-24 ARM repeat superfamily protein (.1) AT1G01830 104 / 1e-23 ARM repeat superfamily protein (.1.2.3) AT5G67340 58 / 1e-08 ARM repeat superfamily protein (.1) AT2G23140 52 / 6e-07 RING/U-box superfamily protein with ARM repeat domain (.1.2) AT3G01400 51 / 8e-07 ARM repeat superfamily protein (.1) AT5G58680 48 / 1e-05 ARM repeat superfamily protein (.1) AT4G16490 44 / 0.0002 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035337 [exp] 478 / 1e-167 AT2G05810 382 / 3e-129 ARM repeat superfamily protein (.1.2) Lus10041369 [exp] 107 / 2e-24 AT2G45720 699 / 0.0 ARM repeat superfamily protein (.1.2) Lus10036559 [exp] 103 / 3e-23 AT2G45720 699 / 0.0 ARM repeat superfamily protein (.1.2) Lus10018423 [exp] 98 / 2e-21 AT1G61350 499 / 2e-171 ARM repeat superfamily protein (.1) Lus10002598 [exp] 96 / 8e-21 AT1G61350 495 / 5e-170 ARM repeat superfamily protein (.1) Lus10029996 [exp] 67 / 1e-12 AT2G05810 239 / 4e-76 ARM repeat superfamily protein (.1.2) Lus10035338 [exp] 67 / 2e-12 AT2G05810 239 / 4e-76 ARM repeat superfamily protein (.1.2) Lus10011516 [exp] 54 / 2e-07 AT2G23140 410 / 5e-134 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10016848 [exp] 53 / 2e-07 AT2G45720 326 / 8e-108 ARM repeat superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G158700 [exp] 393 / 2e-131 AT2G05810 506 / 1e-174 ARM repeat superfamily protein (.1.2) Potri.002G224400 [exp] 385 / 2e-128 AT2G05810 459 / 3e-156 ARM repeat superfamily protein (.1.2) Potri.011G042300 [exp] 136 / 2e-34 AT1G61350 622 / 0.0 ARM repeat superfamily protein (.1) Potri.004G033800 [exp] 129 / 4e-32 AT1G61350 629 / 0.0 ARM repeat superfamily protein (.1) Potri.015G103700 [exp] 116 / 1e-27 AT5G50900 546 / 0.0 ARM repeat superfamily protein (.1) Potri.014G076500 [exp] 112 / 4e-26 AT2G45720 736 / 0.0 ARM repeat superfamily protein (.1.2) Potri.002G153700 [exp] 111 / 6e-26 AT2G45720 717 / 0.0 ARM repeat superfamily protein (.1.2) Potri.012G104400 [exp] 109 / 2e-25 AT5G50900 624 / 0.0 ARM repeat superfamily protein (.1) Potri.007G051000 [exp] 51 / 2e-06 AT2G23140 1018 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Potri.005G144700 [exp] 50 / 3e-06 AT2G23140 972 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029995 pacid=23159889 polypeptide=Lus10029995 locus=Lus10029995.g ID=Lus10029995.BGIv1.0 annot-version=v1.0 ATGCCTCCTTCCTCCGCTGCCGTTGTCACTCCACTTGAACCGCCGCAGTCGTTGCTTGATTTGATCAACGGCGTCCTCTCTCTCCTCTTAGTGTCCTCCC TCGCCGTCCGGTCCTACGTCGGACGGTGGCAAATAATCCGCTCCAAGCTCATCTCACTCCAATCGTCGCTCTCTTCCCTCTCCGACTCACCTCACTGGTC GCAGAACCCACTCCTCCATACTCTGTTGCCGACTCTCCTCTCCACGCTCCAGCGGCTCCACGCGCTCTCCGATCAATCCAACGACCTCTCGTCTTTCTCC GGCGGCAAGCTATTGTTCCAGAGTGACCTCGATATAGCCTCCTCTTCTCTGTCCAACCACCTCAATGACCTCGACTTGCTTCTCAGATCCGGGGTCCTGC ACCAGTCTAACGCCATCGTTTTGTCCCAGCCTGGGCCTGGATCTGAAAAGGATGAGCTTGTGTTCTTCATCCGGGATCTTTTTACCAGGTTGCAAATCGG GGGGGTTGAGTTCAAGAAGAAGGCGCTGGAGTCGCTTCTGCAGATCTTGAACGACGACGAGAAGTCCAAGTCGGCGAATCTGGTGGCGAATGAGGGGAAT ATCGGTTACTTAATCAGCCTCCTCGATCTGCATCACAATCAGCAGCTGATTCGAGACTACGCTGTCTTCGCCGTGTCGGTTCTGGCTTCGGCGAGCGACG AATCTAGGAAGATCGTGTTCGAGGAAGGCGGATTGGGACCGCTGTTGAGAGTTCTCGAGACTGGGTCGATGCCGTTGAAGGAGAAGGCGGCGATTGCGGT GGAAGCTATCACCGCCGACTCGGAAAACGGCTGGGCTGTAGCCGCCTACGGCGGTGTCGCGGTGTTAATCGAAGCTTGCCGGTCCGGCTCTCTAGCTACG CAGACCCATTCCGTCGGAGCGATTCGGAACGTCGCCGCAGTGGACGACATCAAGATGGCTCTAGCGGAAGAAGGCGCAGTTCCCGTTCTGGTAAACTCAC TCGTCGTTGGAACGGCGTCGGCGCAGGAGAAGGCGGCGCACTGCCTCTCGATTCTTGCCGCTTCCGGTGAGTATTTCCGGTCGTTAATCATTCAAGAGAA AGGATTACCGAGGCTGATGCATTTAATTCAAGATTCCTCGAGCTCATCCGAAACAGTAGAACACGTTTTGCGCGCAATCACTGCTCTCTCCGGATCCGAA TCCCTTCTATCATCCTCCACAGCTTTCATCGTCCGGCTCGGAGAACTAATCAAGCACCTGGGCGGCCACCGCCTGCGGCGGTGTCGCGGTGTTAATCGAA GCTTGCCGGTCCGGCTCTCTAGCTACGCAGACCCATTCCGTCGGAGCGATTCGGAACGTCGCCGCAGTGGACGACATCAAGATGGCTCTAGCGGAAGAAG GCGCAGTTCCCGTTCTGGTAAACTCACTCGTCGTTGGAACGGCGTCGGCGCAGGAGAAGGCGGCGCACTGCCTCTCGATTCTAGCCGCTTCCGGTGA
AA sequence Show only first row Show all	>Lus10029995 pacid=23159889 polypeptide=Lus10029995 locus=Lus10029995.g ID=Lus10029995.BGIv1.0 annot-version=v1.0 MPPSSAAVVTPLEPPQSLLDLINGVLSLLLVSSLAVRSYVGRWQIIRSKLISLQSSLSSLSDSPHWSQNPLLHTLLPTLLSTLQRLHALSDQSNDLSSFS GGKLLFQSDLDIASSSLSNHLNDLDLLLRSGVLHQSNAIVLSQPGPGSEKDELVFFIRDLFTRLQIGGVEFKKKALESLLQILNDDEKSKSANLVANEGN IGYLISLLDLHHNQQLIRDYAVFAVSVLASASDESRKIVFEEGGLGPLLRVLETGSMPLKEKAAIAVEAITADSENGWAVAAYGGVAVLIEACRSGSLAT QTHSVGAIRNVAAVDDIKMALAEEGAVPVLVNSLVVGTASAQEKAAHCLSILAASGEYFRSLIIQEKGLPRLMHLIQDSSSSSETVEHVLRAITALSGSE SLLSSSTAFIVRLGELIKHLGGHRLRRCRGVNRSLPVRLSSYADPFRRSDSERRRSGRHQDGSSGRRRSSRSGKLTRRWNGVGAGEGGALPLDSSRFR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G05810			ARM repeat superfamily protein...		Lus10029995 [exp]	0	1
AT2G05810			ARM repeat superfamily protein...		Lus10029996 [exp]	1.0	0.9456
AT2G05810			ARM repeat superfamily protein...		Lus10035337 [exp]	1.4	0.8836
AT2G05810			ARM repeat superfamily protein...		Lus10035338 [exp]	2.4	0.8550
AT1G53730		SRF6	STRUBBELIG-receptor family 6 (...		Lus10003926 [exp]	6.7	0.7506
AT1G76270			O-fucosyltransferase family pr...		Lus10030754 [exp]	7.0	0.7448
AT1G76160		SKS5	SKU5 similar 5 (.1)		Lus10005649 [exp]	8.0	0.7839
AT5G10190			Major facilitator superfamily ...		Lus10027264 [exp]	11.2	0.7105
AT5G32470			Haem oxygenase-like, multi-hel...		Lus10021976 [exp]	12.4	0.7370
AT2G44500			O-fucosyltransferase family pr...		Lus10037475 [exp]	14.3	0.7106
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Lus10026610 [exp]	15.7	0.7463

Compare expression of checked genes

Lus10029995 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.