Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G05810 194 / 5e-59 ARM repeat superfamily protein (.1.2) AT2G45720 79 / 5e-17 ARM repeat superfamily protein (.1.2) AT5G50900 69 / 1e-13 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035338 [exp] 314 / 3e-110 AT2G05810 239 / 4e-76 ARM repeat superfamily protein (.1.2) Lus10029995 [exp] 70 / 4e-14 AT2G05810 438 / 5e-149 ARM repeat superfamily protein (.1.2) Lus10036559 [exp] 70 / 6e-14 AT2G45720 699 / 0.0 ARM repeat superfamily protein (.1.2) Lus10041369 [exp] 70 / 6e-14 AT2G45720 699 / 0.0 ARM repeat superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G224400 [exp] 238 / 5e-76 AT2G05810 459 / 3e-156 ARM repeat superfamily protein (.1.2) Potri.014G158700 [exp] 235 / 8e-75 AT2G05810 506 / 1e-174 ARM repeat superfamily protein (.1.2) Potri.014G076500 [exp] 80 / 2e-17 AT2G45720 736 / 0.0 ARM repeat superfamily protein (.1.2) Potri.002G153700 [exp] 76 / 3e-16 AT2G45720 717 / 0.0 ARM repeat superfamily protein (.1.2) Potri.012G104400 [exp] 66 / 1e-12 AT5G50900 624 / 0.0 ARM repeat superfamily protein (.1) Potri.015G103700 [exp] 66 / 1e-12 AT5G50900 546 / 0.0 ARM repeat superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029996 pacid=23159669 polypeptide=Lus10029996 locus=Lus10029996.g ID=Lus10029996.BGIv1.0 annot-version=v1.0 ATGCATTTGATTCAAGATTCCTCGAGCTCATCGGAAACAGTAGAACACGTCTTGCGCGCAATCACTGCACTCTCCGGATCCGAATCCCTTCTATCATCCT CCACAGCTTTCATCGTCCGGCTCGGAGAACTAATCAAGCACGGGAACCTAACGCTACAGCAACTCTCGGCGTCTCTCCTAGCTCACTTACCCGCCAGCGA CGGAAACAAGAGAGCAATCGGAAGCTGTATGGGTTCCCTATTGAAGCTAATGCAGTCACCGAAACCAGCCGGTCTACAAGAATCAGCAACTCTCGCTTTA GTCTCATTGCTATCAGTACGAACCAATCGGAAAGAGCTGGTCAGAGACGAGAAGAGCGTGATGAGATTGGTACAAATGTTGGATCCGAAGTACGACTTAG TCGCCAAGAAGTATCCGGTAATGGTGGTGACGGCCTTGATGACCGGAGGCAGCGGTGGTTGCCGGAAAAGGCTACTAGCCGCCGGAGCTTACTCTCATTT GCAGCAGCTGACGGAGATGGAGGTCGCCGGATCTAAGAAGGCGTTGCAGAGACTGGCCGGAAACAGACTGAAGACTATGTTCTCAAGGACGTGGAGGGAA TAA
AA sequence Show only first row Show all	>Lus10029996 pacid=23159669 polypeptide=Lus10029996 locus=Lus10029996.g ID=Lus10029996.BGIv1.0 annot-version=v1.0 MHLIQDSSSSSETVEHVLRAITALSGSESLLSSSTAFIVRLGELIKHGNLTLQQLSASLLAHLPASDGNKRAIGSCMGSLLKLMQSPKPAGLQESATLAL VSLLSVRTNRKELVRDEKSVMRLVQMLDPKYDLVAKKYPVMVVTALMTGGSGGCRKRLLAAGAYSHLQQLTEMEVAGSKKALQRLAGNRLKTMFSRTWRE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G05810			ARM repeat superfamily protein...		Lus10029996 [exp]	0	1
AT2G05810			ARM repeat superfamily protein...		Lus10029995 [exp]	1.0	0.9456
AT2G05810			ARM repeat superfamily protein...		Lus10035338 [exp]	2.4	0.8503
AT2G05810			ARM repeat superfamily protein...		Lus10035337 [exp]	3.0	0.7975
AT5G10190			Major facilitator superfamily ...		Lus10027264 [exp]	5.3	0.7409
AT1G53730		SRF6	STRUBBELIG-receptor family 6 (...		Lus10003926 [exp]	8.8	0.7435
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Lus10026610 [exp]	9.7	0.7626
AT1G76270			O-fucosyltransferase family pr...		Lus10030754 [exp]	10.6	0.7281
AT2G20300		ALE2	Abnormal Leaf Shape 2, Protein...		Lus10022848 [exp]	11.0	0.7655
AT1G22790			unknown protein		Lus10028733 [exp]	16.0	0.6831
AT2G44500			O-fucosyltransferase family pr...		Lus10037475 [exp]	27.0	0.6724

Compare expression of checked genes

Lus10029996 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.