Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44950 44 / 2e-05 F-box/RNI-like/FBD-like domains-containing protein (.1) AT3G52680 44 / 2e-05 F-box/RNI-like/FBD-like domains-containing protein (.1.2) AT3G29830 42 / 0.0001 F-box/RNI-like superfamily protein (.1) AT5G53840 42 / 0.0001 F-box/RNI-like/FBD-like domains-containing protein (.1) AT5G22660 41 / 0.0001 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1.2) AT5G22720 41 / 0.0002 F-box/RNI-like superfamily protein (.1.2) AT2G04230 41 / 0.0002 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) AT5G44980 41 / 0.0002 F-box/RNI-like/FBD-like domains-containing protein (.1) AT4G03220 40 / 0.0002 Protein with RNI-like/FBD-like domains (.1) AT1G16930 40 / 0.0003 F-box/RNI-like/FBD-like domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030031 [exp] 74 / 3e-17 AT2G04230 53 / 4e-09 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) Lus10035326 [exp] 74 / 1e-16 AT5G27750 66 / 1e-12 F-box/FBD-like domains containing protein (.1) Lus10029986 [exp] 75 / 5e-16 AT1G20920 347 / 2e-109 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10029953 [exp] 67 / 1e-13 AT5G03100 66 / 3e-12 F-box/RNI-like superfamily protein (.1) Lus10029999 [exp] 61 / 7e-13 ND 37 / 4e-04 Lus10035308 [exp] 62 / 4e-12 AT5G22730 57 / 2e-09 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10037440 [exp] 63 / 5e-12 AT1G69630 84 / 5e-17 F-box/RNI-like superfamily protein (.1) Lus10029952 [exp] 63 / 5e-12 AT5G03100 68 / 1e-12 F-box/RNI-like superfamily protein (.1) Lus10027507 [exp] 62 / 1e-11 AT1G01580 475 / 1e-152 FERRIC CHELATE REDUCTASE DEFECTIVE 1, ferric reduction oxidase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G104100 [exp] 50 / 2e-07 AT3G26922 96 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.001G395000 [exp] 49 / 4e-07 AT4G14103 89 / 4e-19 F-box/RNI-like superfamily protein (.1.2) Potri.011G104300 [exp] 48 / 6e-07 AT3G26922 91 / 2e-20 F-box/RNI-like superfamily protein (.1) Potri.011G104200 [exp] 48 / 8e-07 AT3G26922 97 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.015G002001 [exp] 44 / 2e-05 AT2G04230 59 / 9e-10 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) Potri.001G337200 [exp] 43 / 4e-05 AT5G22660 86 / 6e-19 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1.2) Potri.017G146500 [exp] 42 / 0.0001 AT5G02920 64 / 2e-11 F-box/RNI-like superfamily protein (.1) Potri.017G146400 [exp] 42 / 0.0001 AT3G28410 79 / 2e-15 F-box/RNI-like superfamily protein (.1) Potri.015G002100 [exp] 41 / 0.0002 AT4G03220 103 / 5e-24 Protein with RNI-like/FBD-like domains (.1) Potri.015G011200 [exp] 40 / 0.0003 AT4G03220 90 / 1e-19 Protein with RNI-like/FBD-like domains (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029997 pacid=23159674 polypeptide=Lus10029997 locus=Lus10029997.g ID=Lus10029997.BGIv1.0 annot-version=v1.0 ATGACTAATCTAAGCCCAGTTGGAATCCGTAACAAATTAGAAACAGCCGCCGCCTCACTGAATCATTCGACCTTGGCCCCTTCGATGGCGAACCAATCGA CCCCAGCCGGCGAAGATCGGATCTCAGAATTGCCGGATGGAATTCTCCACTGCATCTTAGGCCGGTTAGACAACTCCAAACAATCAACGCAGACTGTAAT CCTGTCCAAGCGATGGCGAAGCATCTGCGAGTCGTACCCTATCGTCGAATTCCACCCTGCGATGCGAATCATACGATCATCTCGATGGAGATATTTTGCT CGGTTCGCGAAACCGCAGGTGGAAACCCTAGAACTCGAAGATAATTTTTCAAGCTTGATGAAAATCCACGTTCCTCGCGACTTTGCTTCCGCACCCGAAG GCGATGCAACTCTCGTTTTCTCACGACTTGGAAATCGAAGATATTGCAGCTCGTGGATTAGAAACTCTGCGAATTTCAGACGAATATTCTAG
AA sequence Show only first row Show all	>Lus10029997 pacid=23159674 polypeptide=Lus10029997 locus=Lus10029997.g ID=Lus10029997.BGIv1.0 annot-version=v1.0 MTNLSPVGIRNKLETAAASLNHSTLAPSMANQSTPAGEDRISELPDGILHCILGRLDNSKQSTQTVILSKRWRSICESYPIVEFHPAMRIIRSSRWRYFA RFAKPQVETLELEDNFSSLMKIHVPRDFASAPEGDATLVFSRLGNRRYCSSWIRNSANFRRIF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52680			F-box/RNI-like/FBD-like domain...		Lus10029997 [exp]	0	1
					Lus10006316 [exp]	1.0	0.9047
AT3G13898			unknown protein		Lus10008387 [exp]	17.0	0.8780
AT1G49410		TOM6	translocase of the outer mitoc...		Lus10007383 [exp]	21.1	0.8683
AT5G63135			unknown protein		Lus10019491 [exp]	24.2	0.8324
AT5G41010		NRPE12, NRPD12,...	DNA directed RNA polymerase, 7...		Lus10007891 [exp]	25.5	0.8253
AT2G18960		OST2, PMA, AHA1	PLASMA MEMBRANE PROTON ATPASE,...		Lus10028202 [exp]	31.0	0.7440
AT2G27990	HD	PNF, BLH8	POUND-FOOLISH, BEL1-like homeo...		Lus10040256 [exp]	31.2	0.8650
AT5G23570		SGS3, ATSGS3	SUPPRESSOR OF GENE SILENCING 3...		Lus10026697 [exp]	31.6	0.8609
					Lus10038209 [exp]	37.2	0.8601
AT2G48020			Major facilitator superfamily ...		Lus10027977 [exp]	38.4	0.8593

Compare expression of checked genes

Lus10029997 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.