Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05020 435 / 5e-138 ENTH/ANTH/VHS superfamily protein (.1) AT4G32285 251 / 5e-71 ENTH/ANTH/VHS superfamily protein (.1.2) AT2G25430 248 / 8e-70 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1) AT4G02650 230 / 4e-64 ENTH/ANTH/VHS superfamily protein (.1) AT1G03050 227 / 3e-63 ENTH/ANTH/VHS superfamily protein (.1) AT2G01600 176 / 4e-46 ENTH/ANTH/VHS superfamily protein (.1) AT5G57200 173 / 4e-45 ENTH/ANTH/VHS superfamily protein (.1) AT4G25940 172 / 6e-45 ENTH/ANTH/VHS superfamily protein (.1) AT1G14910 172 / 2e-44 ENTH/ANTH/VHS superfamily protein (.1) AT5G35200 153 / 7e-39 ENTH/ANTH/VHS superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035340 [exp] 1145 / 0 AT1G05020 489 / 1e-164 ENTH/ANTH/VHS superfamily protein (.1) Lus10029986 [exp] 542 / 1e-179 AT1G20920 347 / 2e-109 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10002920 [exp] 256 / 1e-72 AT2G25430 909 / 0.0 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1) Lus10001502 [exp] 256 / 2e-72 AT2G25430 914 / 0.0 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1) Lus10019402 [exp] 226 / 1e-62 AT2G25430 580 / 0.0 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1) Lus10043260 [exp] 209 / 3e-57 AT4G32285 506 / 2e-173 ENTH/ANTH/VHS superfamily protein (.1.2) Lus10030016 [exp] 184 / 3e-47 AT2G32970 799 / 0.0 unknown protein Lus10038122 [exp] 173 / 3e-45 AT5G35200 714 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10034610 [exp] 172 / 1e-44 AT2G01600 765 / 0.0 ENTH/ANTH/VHS superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G224500 [exp] 492 / 4e-160 AT1G05020 500 / 2e-170 ENTH/ANTH/VHS superfamily protein (.1) Potri.014G158600 [exp] 492 / 4e-160 AT1G05020 493 / 2e-167 ENTH/ANTH/VHS superfamily protein (.1) Potri.006G255000 [exp] 262 / 8e-75 AT2G25430 866 / 0.0 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1) Potri.006G066900 [exp] 241 / 1e-67 AT4G32285 665 / 0.0 ENTH/ANTH/VHS superfamily protein (.1.2) Potri.018G128200 [exp] 233 / 4e-65 AT4G32285 626 / 0.0 ENTH/ANTH/VHS superfamily protein (.1.2) Potri.006G118100 [exp] 232 / 4e-65 AT1G03050 605 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.018G142800 [exp] 176 / 2e-46 AT5G57200 655 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.008G132100 [exp] 172 / 6e-45 AT2G01600 749 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.006G075800 [exp] 168 / 1e-43 AT2G01600 543 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.010G110000 [exp] 165 / 9e-43 AT2G01600 732 / 0.0 ENTH/ANTH/VHS superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0009 [flax] [poplar] ENTH_VHS PF07651 [flax] [poplar] ANTH ANTH domain CL0022 [flax] [poplar] LRR PF07723 [flax] [poplar] LRR_2 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10029998 pacid=23159732 polypeptide=Lus10029998 locus=Lus10029998.g ID=Lus10029998.BGIv1.0 annot-version=v1.0 ATGCAATCCTCCACTGCATCTTCCGCCACATACCGTCCTCCAAAGAAACAGTGCAGACTGCCGTACTTTCCAGTCGATGGCGGCAANNNNNNAGCAGAGT GTGTAGCCATCAAGGTAAGTATCCGTGGCGTCAAAGAATGCGTATATCCCTTCCTCCGCTTGTCCTTCGAATCACTCTCGAATTCCAGCGCAAGGACTCT CCACCTGGAGAGAATCCGGTTTAAATCGAAGGAAAACAGTGAGGAAGATGTCGGTCTTTCCCTTGATTCTCTACTTCACTTGCATCTGGATAGGATCCAA TTCCGGCATCCTCGGCTTTTCACAAGCTTGATGGCTAGCTCTCCGCTCCTCGAAACCCTAGAAATCATCCGTTATGTTTACGGGATGAGGAACCTAAATT TTCCCAATCTGAAGACCCTCAAAATTTCAACAATCATCGACAGGGACAAGAGTACTGATGGAGTGTTCATGGACGAGTTCATAGCCCCTCAGCTGAATAC TCTGGAAATTGATAATTGTTTTTATTTGAGATTGAGTGATGTATCTCGGGCAGTTTCTAAGCTCGAGAATCTGAAGTACTTGACCCTTACTCGATTCGAT CCACCAGAGAAGACACTGAAACTTTCGTGTCCCAAGCTCGAGGAATTCAATCTGTGGGCGCCGCCTGGACTGGAAGAGATCGAGCTCGACGTTAAGCCTT GTTTTAGGAAGTTTTTCATGCATAACCGCAGATCATTGCCGGGCGAATTGAAGAAATGTGAAATCCATGGTGCCGCCGCTGATTGTCGATGGGAAGTTGA TTTCTGCATAACGAGTATTTGCTTACGAAATTCTGTATCACACCAATGGTTTGTTGGATTCAAGAGCTTCATGATGAGATTCCCTCAGCTCCACGCCATT AGCATCTCCAGCTGGGATATCTGCAAAGACGCAAAAGGAGAGGACGACGACGGTGAACCGTCATTGTACATCGAGCACTTGAAGATAATGGTTTCGGAGT CTCTCGATCGACGCAATTTCAACGAACCTTCCCCACCGGTGGAGCAGCTGCAGGATTTGGCTTCGAAGAAGAAAGCCGAGTATGTAGCCATCAAGGTACC GATCAATAATCCTGGTATTTGCAACCACAGCGTTGCTGTCCTCTGGTTGCCCTTTGAATCGCTCTCGAATTCCAGCGCAAGGACACTCCACTTGCAGAGA ATGCAGTTTGAATCGAAGAAGAAGCAGAAGAAGAAGAAGAACAACGATCTCCGTCTTTCCCTGGGTTCTCTACTTCACCTGCATCTGGATAGAGTCCGAT TCACGAATCCTCGGCTTTTCCCAAGCTTGATGGCTAGCTCTCCGCTCCTCGAACCCCTAGAAATCACCGGTGATGCTAAGACAATGAGTAACCTAAATGT TCCGAATCTGAAGACCCTCAAACTTGTTAATATCAACGACGCGTTTCGGTTGTTCAAAAAGGAGTTCATAGCCCCTCAGTCGGATACTCTGGAAATCGAT GGTGGTTGTTTTTTGACATTGAAGGATGTCTACCGGTTGGTTTCTAAGCTCGAGAATCTCAAGTACTTGACGGTGACTGGATTCATTCAACGAGAGAAGA CGATGAAACTTGGTGTAGCCAATCTTGATGTTCACTACACCCTTCTCCACTTACTTTTGTTGAAGCGCCTCCAACCTAGAAGTCCTCATCCTCAAGGCCA CCCGCCACGACGAAACCCCCCCCGCCACGACGATGCACCGATCGACGATCGCTATGTCGCTGAGGTCCTCTCCCTCATTTCTTCCAGCAAGGCTTATGCC GGAGCGTGCGCCTTAGTCATCTCCAAACGAATAGGTCGTACGAGAAATTGGATTGTCGCGTTGAAATCTCTACTCCTCGTGTTGAGAATCTTCCAGGACG GGGATCCTTACTTCCCGAGGGAAGTCCTCCACGCGATGAAGCGTGGGGCTAGAATCCTGAACCTGTCAGGATTCCGTGATGATTCCAATTCCAGCCCGTG GGATTTTACCGCTTTCGTCAGGACGTTCGCGTTGTACCTCGACGAGCGTCTGGACTGCTTCATTACAGGGAAACTGCAGCGTCGGTTCACGAATCGCCGT CGTGATAGCGGTGGCGATCCTAGAAACCGGAGGTTCAGGCAGCCGACGAAGATGTACTTCACCGACAACATGAAGCCGCCGGTTCTGCTTGACCGGATCT CGTTCTGGCAGAAGCTGCTCGACCGGGCGATGGCGACCCGACCGACCGGTGCGGCTAAATCGAACCGGTTGGTCCGGATATGTCTATACGCTGTCGTTCA GGAAAGCTTTGATCTTTACAGAGACATCTCCGACGGATTAGCTCTTCTTCTCGACAGCTTCTTCCACCTTCCTTACCAGTCCTGCGCCACTGCTTTCCAA GCTTGCGTGAAGGCGTCGAAGCAATTCGAAGAGCTATGTTCTTATTACGATTTCTGTAAGGGCATGGGAGTCGGAAGGACGTCCGAGTATCCGAGCGTTC AGAGGATATCGGAGGAACTGGTCGAGACATTACAGGAATTTCTAAAAGACCAAGCGTCTTTCCCTGCGCACGGCCAATCTCCACCGCAATTGCGAATTGC AATGGATAAATCGATAGATCCGGAGGATGCGGAAAGTCAAGTGATGCCTCATGAACGCCAATTGTCTTCGTTGGAAGACCTGATGGGACTCGCCGGGATG TGTCAGGATTCGTCGGAGCAGCAGTTGGATTATAACCAGGACATGATCAGCGCCCGGGATAGTGCATTGTCGAGTTCGTTACCTTTCTCGACAACGATGA GCGGGAAGAGTAACTCGATAGATCTATTATCGCTGGACGATTGGGATTTCGAGGATTCGAGCGAAAGGGGACACGAAAAAAGAAATTCAGGGTGGGAGAT TGTGCTGGCGGAGATCATGTCTCAGCCAAATCAGCTTTCCGAAACCGAAATTCCTAACGATTTCTTCGACTCAGGATTTGAATTCGGAAACAGTCAGGTA CCTGACCAGTACCAATACAATCCGTTTCTACAAGATCTGGATATTCCTCTGCCTCAAATTGAATCACAGTCGACAGCGCCGGCCAATGGAGATGAAAAGA GCATTGTCCTAGTGGACGATCTGTTCTCGTTGCCGGCTCCGGCATCGGCCGTCGTAGCTCCGACGTTCCAATCAATGCCGACGTTCAGCATTCAGCGTCC TGAGATCAACGAAATAGGAGATTGGAAAATTGAACAGAGGACGACAAGCCCGGCAGTAGTTCCGATAGACGATTTGTTCTCGGCTGTGGCAGCTCCGACG TTCCAAGCAAGTCCGACGCCGGCCATTCCGAATCAAGGTATAATCGAAGCCACCGGAGATGAAAGAGCGATAATTTTGGTGGACCACATGTTTTCCACAT CGGTGGCGCTGCCGACGTTCAGCGTGCAGAGTCCGGAAAGAATCAAAACGGAATCATCGACGGCGACGATGGGAGAAGACAAGGCAATAGTTATAGTGGA TGATTTGTTCTCGGCAGGGACTATGGCGGCGGCTCCGACGTTTCAGGCGACGCCGACGTTCAGCGCCCAGAGTAGTGGAGGAGGAGGAGGAGGAGGGAGT AGTGACGATCTTTTCGGGCCGTGGCCGGCGGTGGAGACGACGGCGGAGGATCGAGAGAAGCTAATGAGGGAACAACAAATGTGGTTGGAGAATCAAAACA GGATTATAGCGAAGAATTTGCGTTGA
AA sequence Show only first row Show all	>Lus10029998 pacid=23159732 polypeptide=Lus10029998 locus=Lus10029998.g ID=Lus10029998.BGIv1.0 annot-version=v1.0 MQSSTASSATYRPPKKQCRLPYFPVDGGXXXAECVAIKVSIRGVKECVYPFLRLSFESLSNSSARTLHLERIRFKSKENSEEDVGLSLDSLLHLHLDRIQ FRHPRLFTSLMASSPLLETLEIIRYVYGMRNLNFPNLKTLKISTIIDRDKSTDGVFMDEFIAPQLNTLEIDNCFYLRLSDVSRAVSKLENLKYLTLTRFD PPEKTLKLSCPKLEEFNLWAPPGLEEIELDVKPCFRKFFMHNRRSLPGELKKCEIHGAAADCRWEVDFCITSICLRNSVSHQWFVGFKSFMMRFPQLHAI SISSWDICKDAKGEDDDGEPSLYIEHLKIMVSESLDRRNFNEPSPPVEQLQDLASKKKAEYVAIKVPINNPGICNHSVAVLWLPFESLSNSSARTLHLQR MQFESKKKQKKKKNNDLRLSLGSLLHLHLDRVRFTNPRLFPSLMASSPLLEPLEITGDAKTMSNLNVPNLKTLKLVNINDAFRLFKKEFIAPQSDTLEID GGCFLTLKDVYRLVSKLENLKYLTVTGFIQREKTMKLGVANLDVHYTLLHLLLLKRLQPRSPHPQGHPPRRNPPRHDDAPIDDRYVAEVLSLISSSKAYA GACALVISKRIGRTRNWIVALKSLLLVLRIFQDGDPYFPREVLHAMKRGARILNLSGFRDDSNSSPWDFTAFVRTFALYLDERLDCFITGKLQRRFTNRR RDSGGDPRNRRFRQPTKMYFTDNMKPPVLLDRISFWQKLLDRAMATRPTGAAKSNRLVRICLYAVVQESFDLYRDISDGLALLLDSFFHLPYQSCATAFQ ACVKASKQFEELCSYYDFCKGMGVGRTSEYPSVQRISEELVETLQEFLKDQASFPAHGQSPPQLRIAMDKSIDPEDAESQVMPHERQLSSLEDLMGLAGM CQDSSEQQLDYNQDMISARDSALSSSLPFSTTMSGKSNSIDLLSLDDWDFEDSSERGHEKRNSGWEIVLAEIMSQPNQLSETEIPNDFFDSGFEFGNSQV PDQYQYNPFLQDLDIPLPQIESQSTAPANGDEKSIVLVDDLFSLPAPASAVVAPTFQSMPTFSIQRPEINEIGDWKIEQRTTSPAVVPIDDLFSAVAAPT FQASPTPAIPNQGIIEATGDERAIILVDHMFSTSVALPTFSVQSPERIKTESSTATMGEDKAIVIVDDLFSAGTMAAAPTFQATPTFSAQSSGGGGGGGS SDDLFGPWPAVETTAEDREKLMREQQMWLENQNRIIAKNLR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05020			ENTH/ANTH/VHS superfamily prot...		Lus10029998 [exp]	0	1
AT3G24530			AAA-type ATPase family protein...		Lus10005293 [exp]	8.5	0.8318
AT5G60920		COB	COBRA-like extracellular glyco...		Lus10017861 [exp]	10.0	0.8214
AT2G19130			S-locus lectin protein kinase ...		Lus10012955 [exp]	11.5	0.8204
AT4G25440	C3HZnF	ZFWD1	zinc finger WD40 repeat protei...		Lus10000559 [exp]	16.0	0.8214
AT2G20495			unknown protein		Lus10024909 [exp]	16.4	0.7849
AT4G11170			Disease resistance protein (TI...		Lus10010222 [exp]	16.9	0.8135
AT5G15070			Phosphoglycerate mutase-like f...		Lus10005263 [exp]	19.1	0.7890
AT4G03230			S-locus lectin protein kinase ...		Lus10012956 [exp]	19.7	0.8132
AT1G23450			Tetratricopeptide repeat (TPR)...		Lus10029138 [exp]	22.0	0.7126
AT1G72890			Disease resistance protein (TI...		Lus10009384 [exp]	22.5	0.7713

Compare expression of checked genes

Lus10029998 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.